Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq16 165 3e-38 seq1103 152 2e-34 seq89 149 3e-33 >seq16 Length=2785960 Score = 165 bits (182), Expect = 3e-38 Identities = 141/173 (82%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 511 TGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGG 570 |||||| ||||||| | ||| || | || ||||||| ||||||| ||||| || Sbjct 2170942 TGCACCTACGACCGACCACGATCTCAGAGAGAGG-TTTGAGTTGGAGCATATCTGTTAGG 2171000 Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 |||||||||||||||||||||||||| ||| ||||| ||| |||||| ||| |||||| Sbjct 2171001 ACCCGAAAGATGGTGAACTATGCCTGGGTAGAATGAAGTCAGGGGAAACCCTGATGGAGG 2171060 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| |||| | ||| ||||||||||| |||||||| |||||||||||||||| Sbjct 2171061 TTCGTAGCGATACTGACGTGCAAATCGTTCGTCAAACTTGGGTATAGGGGCGA 2171113 >seq1103 Length=1067 Score = 152 bits (168), Expect = 2e-34 Identities = 136/169 (80%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| | |||| | ||| | ||||| | ||||| |||| ||||||||||| Sbjct 487 GAGTCGCGTTCATCGGGATTTGAGCGCAAAATGTGTGGTAAGTTTCACATAAAGCTAAAT 428 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 |||||| |||||||||||| ||||||| |||| ||||||||||||| |||||||| Sbjct 427 ATTGGCGCGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAAAGTTCTTTGGAA 368 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACC 208 |||||||| ||||| | |||||||| ||||| ||||||| ||| |||| Sbjct 367 AGAGAGTT-AAAAGTGCCTGAAATTGCTGAAAAGGAAGCGATTGGAACC 320 >seq89 Length=23948 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 2447 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 2388 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 2387 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 2328 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 3679 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 3620 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 3619 ACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 3560 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 3559 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 3520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079938610100