Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1327 190 6e-46 >seq1327 Length=948 Score = 190 bits (210), Expect = 6e-46 Identities = 268/373 (72%), Gaps = 30/373 (8%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| ||||||| |||||||||||||||||||||||| | || |||||||||||||||| Sbjct 935 TACGCCCGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCTCGTACAAGCGGTGGAGCAT 876 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| | |||||||| |||||||||| || ||| | | | Sbjct 875 GTGGTTTAATTCGATGTAACGCGAAAAACCTTACCAGGACTAGACTAAATTT-----ATT 821 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 || | || | | || | | | ||||| | ||||||| ||||||||| Sbjct 820 TAAAATTATTAATATTAATTT----TAAAAAAAATACAGGAGGTGCATGGCTGTCGTCAG 765 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTT-----AAGCTTA 235 |||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||| Sbjct 764 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCTACGAGCGCTACCCTTATTTAAAGTTTA 705 Query 236 GTTGCCATCATTAAGTTGGGCACTCTA-----AGTTGACTGCCGGTGACAA-ACCGGAGG 289 | ||| |||| || || || | || | | |||| | |||| Sbjct 704 --TTAAATCTTTAAAAACTGC-CTATATAAATATTTAAAT-------ACAATATAGGAGA 655 Query 290 AAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACA 349 |||| | ||| ||||||| || | ||||||| |||| | |||||||||||||||||||| Sbjct 654 AAGGAGAGGAAAACGTCAAGTCTTTATGCCCCCTATGTTCTGGGCTACACACGTGCTACA 595 Query 350 ATGGACAATACAA 362 || || ||||| Sbjct 594 ATAGATGGTACAA 582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503956955520