Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq699 327 2e-87 seq658 244 2e-62 seq14 201 2e-49 seq5 95.1 2e-17 seq17 77.0 5e-12 seq7 77.0 5e-12 >seq699 Length=1384 Score = 327 bits (362), Expect = 2e-87 Identities = 228/258 (88%), Gaps = 1/258 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| ||| | | |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 843 ACTCGTTGGATGCATCAGTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACAGA 902 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | | || | | ||||||||||||||| | | Sbjct 903 CCTGTTATTGCCTCAAACTTCCTTGCGTTAGACACGCAAAGTCCCTCTAAGAAGTGATAC 962 Query 122 ACCAAC-CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | ||| || ||| || |||||||||||||||||||||||||||||| |||||||| Sbjct 963 AAGAACACAAAGTTCTTGACCCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTA 1022 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1023 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 1082 Query 241 AAGAGCTATCAATCTGTC 258 |||||||||||||||||| Sbjct 1083 AAGAGCTATCAATCTGTC 1100 >seq658 Length=1433 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 879 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 821 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 820 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 762 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 761 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 702 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 701 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 642 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 641 ATCAATCTGTC 631 >seq14 Length=3117802 Score = 201 bits (222), Expect = 2e-49 Identities = 200/258 (78%), Gaps = 1/258 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 |||| ||| | | ||||||| |||||||||| ||||||||||||||| |||||| | || Sbjct 150387 ACTCACTGGATGCTTCAGTGTGGCGCGCGTGCAGCCCAGAACATCTAACGGCATCGCCGA 150446 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||| |||| ||||| | || | || | | | |||| ||||||| | | Sbjct 150447 CCTGTTATTGTCTCACGCTTCCTTGGGTTAGACACGCAGATTCCCGGTAAGAAGTGATAC 150506 Query 122 ACCAAC-CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTA 180 | ||| | ||| || ||| ||||| || ||||||||||| |||| |||||||| Sbjct 150507 AAGAACACGAAGTTTTTGACCCTACTTAGCGGGGAAAGGTCTCGTTTGTTAACGGAATTA 150566 Query 181 ACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGA 240 | | ||||||||||||| | ||| ||||||||| | ||||||||| |||||||||||| Sbjct 150567 AGGAAACAAATCACTCCATCGACTGAGAACGGCCCTCTACCACCACCGATAGAATCAAGA 150626 Query 241 AAGAGCTATCAATCTGTC 258 ||||||||| ||||||| Sbjct 150627 AAGAGCTATAGATCTGTC 150644 >seq5 Length=5325513 Score = 95.1 bits (104), Expect = 2e-17 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 145 TTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACT 204 |||||||| || ||||||||||||| | | | | ||||||||| | |||| ||||| Sbjct 4273392 TTTAGCAGCTTCGAGTCTCGTTCGTTAGCAAACGTGAGCAGACAAATTATTCCATCAACT 4273333 Query 205 AAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTCCCT 264 | |||||| | ||||| ||||| ||||||||||||||||| | | | || ||| |||| Sbjct 4273332 AGTAACGGCTACGCACCGCCACCAATAGAATCAAGAAAGAGTTCTGAGTCCGTCAACCCT 4273273 >seq17 Length=2688968 Score = 77.0 bits (84), Expect = 5e-12 Identities = 61/73 (84%), Gaps = 4/73 (5%) Strand=Plus/Minus Query 155 TAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCC 214 |||||||||||| | ||| | ||||||||||||| |||||||| | ||||| ||| | Sbjct 1439874 TAAGGTCTCGTT----AACGGGACTAACCAGACAAATTACTCCACCGAGTAAGAGCGGGC 1439819 Query 215 ATGCACCACCACC 227 ||||||||||||| Sbjct 1439818 ATGCACCACCACC 1439806 >seq7 Length=4160031 Score = 77.0 bits (84), Expect = 5e-12 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 165 TTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACC 224 |||||| ||||||||||| || || || | |||||||||| |||| | |||||||||||| Sbjct 2164680 TTCGTTGTCGGAATTAACTAGCCATATTAGTCCACCAACTCAGAAAGACCATGCACCACC 2164739 Query 225 ACCCATAGAA 234 ||| | |||| Sbjct 2164740 ACCTACAGAA 2164749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796777908222