Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq89 347 2e-93 seq16 228 1e-57 seq2313 159 6e-37 seq86 73.4 7e-11 >seq89 Length=23948 Score = 347 bits (384), Expect = 2e-93 Identities = 254/294 (86%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 439 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 498 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 499 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 558 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 559 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 618 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 619 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 678 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 679 TAAAACCCAAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 732 >seq16 Length=2785960 Score = 228 bits (252), Expect = 1e-57 Identities = 153/171 (89%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 123 TCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGA 182 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2173152 TCTGCGTCTCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGA 2173093 Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCA 242 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 2173092 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTGAA 2173033 Query 243 AATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | |||| | ||||||||||||||||||| |||||| |||||||||| Sbjct 2173032 AGTTTCTCAGACCTAAAGGATCGATAGGCCATGCTTTCACAGTTTGTATTC 2172982 >seq2313 Length=626 Score = 159 bits (176), Expect = 6e-37 Identities = 126/150 (84%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 150 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 91 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| | ||||||||||||| || ||| | Sbjct 90 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGCGGGTGAACAATCCGACACTTTGAG 31 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCG 149 | |||||| || |||||||||||||||| Sbjct 30 ACTTCTGCGTCTCAATGATAGGAAGAGCCG 1 >seq86 Length=38152 Score = 73.4 bits (80), Expect = 7e-11 Identities = 122/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||||||| || ||| |||| ||||| ||||| Sbjct 20081 CTGTCTCACGACGTTCTGAACCCAGCTCACGTGCCGCTTTAATGGGCGAACAGACCAACC 20022 Query 113 CTTACCGAATTCTGCTTCGG---TATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| || ||||| | | | ||| || ||||||||||||| | |||| | Sbjct 20021 CTT---GAGACCTGCTACAGCCTCAGGATGCGACGAGCCGACATCGAGGTGCCAAACCTC 19965 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 |||| |||| || | || | | |||| ||||||||| ||||||||| Sbjct 19964 CCCGTCAATATGGACTATCGGGAGAGATCAGCCTGTTATCCCTAGAGTAACTTTT 19910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854375547072