Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq699 282 8e-74 seq658 197 3e-48 seq14 172 1e-40 >seq699 Length=1384 Score = 282 bits (312), Expect = 8e-74 Identities = 253/313 (81%), Gaps = 6/313 (2%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGC--CAGGCCCGCTTTGG-CGGGTCGCCGGCTTCT 76 || ||||||||||||||||||||||| || | | | || | || | ||||| Sbjct 1009 GAACGAGACCTTAACCTGCTAAATAGGGTCAAGAACTTTGTGTTCTTGTATCA--CTTCT 952 Query 77 TAGAGGGACTAT-CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 |||||||||| | || || | | | ||||||||||||||||||||||||||||||||| Sbjct 951 TAGAGGGACTTTGCGTGTCTAACGCAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 892 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 |||||||||||||||| |||||||||||||||||| | |||||||||| | |||||| Sbjct 891 CTTAGATGTTCTGGGCTGCACGCGCGCTACACTGATGCATCCAACGAGTTTACAACCTTG 832 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 |||| |||||| ||||||||| | | | ||||| |||||||||| ||||||||| Sbjct 831 GCCGACAGGTCTAGGTAATCTTTTGAGTATGCATCGTGATGGGGATAGATTATTGCAATT 772 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| ||||||||||||||||||||||| |||| |||| |||| ||| ||||||||| Sbjct 771 ATTAATCTTCAACGAGGAATGCCTAGTAGGCGCAAGTCAGCAGCTTGCGCCGATTACGTC 712 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 711 CCTGCCCTTTGTA 699 >seq658 Length=1433 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 781 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 838 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 839 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 898 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 899 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 958 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 959 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 1018 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 1019 AAGTCCCTGCCCTTTGTA 1036 >seq14 Length=3117802 Score = 172 bits (190), Expect = 1e-40 Identities = 196/260 (75%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTAT-CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||| |||| | | || || | || | ||||| |||| |||||||||||| | | Sbjct 150500 CTTCTTACCGGGAATCTGCGTGTCTAACCCAAGGAAGCGTGAGACAATAACAGGTCGGCG 150441 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||| ||||||||||||||| |||||||||| ||||||| | ||| ||||| | | Sbjct 150440 ATGCCGTTAGATGTTCTGGGCTGCACGCGCGCCACACTGAAGCATCCAGTGAGTTTACAA 150381 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG--TCGTGCTGGGGATAGAGCAT 248 ||||||||| || | | |||| ||| || | | || ||||| | ||||| | | | Sbjct 150380 CCTTGGCCGACAGATATAGGTA--CTTTTTTGAGTATGCATCGTGATTGGGATGGGGTGT 150323 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 |||||||||| |||||||||||||||| ||||| |||| || | |||| ||| || Sbjct 150322 TGCAATTATTAATCTTCAACGAGGAATGTCTAGTGGGCGCAAGTTAGCAGCCTGCGCCGA 150263 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||||||||||| |||||| Sbjct 150262 TTACGTCCCTGTTTTTTGTA 150243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947172891136