Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1679 491 1e-136 seq78 98.7 3e-18 >seq1679 Length=804 Score = 491 bits (544), Expect = 1e-136 Identities = 390/456 (86%), Gaps = 13/456 (3%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| ||||||||||||||| | ||| |||||||||||||||||||||||||||||||| Sbjct 351 TATTTCTTGTCACTACCTCCCTGAGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 410 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 411 TTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 470 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| | ||| ||||| ||| || |||| ||||||| ||||||| |||||| ||| Sbjct 471 CCCGTCACTGCCACGGTAGTCCAATACAGTACCGTCGAAAGCTGATAGGTCAGAAACTTG 530 Query 223 AATGAACCATCGCCG-GCTCAAGGCC---ATGCGATTCGTTAAGTTATTATGAATCACC- 277 ||||| ||||||||| | |||||| ||||||| |||| |||| ||||||||||| Sbjct 531 AATGATCCATCGCCGACCAAAAGGCCATAATGCGATCCGTTCGGTTACTATGAATCACCT 590 Query 278 AAGGAGC-CCCGAAGG-GCGTTGGTTTTTTATCTAATAAATACACCCCTTC--CGA-AGT 332 |||| | |||||||| | ||||||| | ||||||||||| || |||||| ||| | Sbjct 591 GAGGACCACCCGAAGGTGGGTTGGTTCTGTATCTAATAAACACTACCCTTCCACGAGGGA 650 Query 333 CGGGGT-TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTAC 391 | ||| | | |||||||||||| ||||||||||||||||||||||||||||| | || Sbjct 651 AGAGGTATGTGCGCATGTATTAGCCATAGAATTACCACGGTTATCCATGTAGTAAAG-AC 709 Query 392 TATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT 451 ||||||||||| ||||||| ||||||||||||||||||||||| | ||||| | |||| Sbjct 710 CATCAAATAAACTATAACTGTTTTAATGAGCCATTCGCAGTTTCGCCGTATA-AAAGCTT 768 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 |||||||||||||||||||||||||||| ||||||| Sbjct 769 ATACTTAGACATGCATGGCTTAATCTTTAAGACAAG 804 >seq78 Length=98031 Score = 98.7 bits (108), Expect = 3e-18 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404 || ||||| | |||| |||||||| | |||||| | || || ||| ||||||||||| Sbjct 43475 CACGTATTGGGCATAGATTTACCACGATGATCCATCTCGTGAG-TACCATCAAATAAACT 43417 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 | || ||||||||||| |||||||| || | |||| | ||||| |||||| | || Sbjct 43416 ACGGTTGCTTTAATGAGCCCTTCGCAGTCTCGCGATATA-AAAGCTTACACTTAGCCGTG 43358 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTA 497 |||| ||| ||| |||| |||||| ||||| Sbjct 43357 CATGATTTAGCCTTCAAGACCAGCATACGACTA 43325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510356772352