Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sarcocystis_20neurona_20[genbank_20GCA_5F000875885.1_202015-02-13] 2,862 sequences; 130,023,008 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq54 145 6e-30 >seq54 Length=544971 Score = 145 bits (160), Expect = 6e-30 Identities = 256/369 (69%), Gaps = 18/369 (5%) Strand=Plus/Minus Query 65797 CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAA 65856 |||||| | || | |||||||| |||||| || || || || || || ||||| |||| Sbjct 228257 CATCAGCATGAAGGCGTCGGCCAAACCTTGGACACCTATTCCTATCGGGCGATGTCGCAT 228198 Query 65857 ATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATT 65916 ||| | |||||||| | |||||||| ||| | ||||| |||||||||| ||| Sbjct 228197 GTTGCTCTTCCGTGCCTCAGGAATAGGGTAGTGATTTCTGTCGATGATGCGATTCAGATT 228138 Query 65917 GCGTGTCACCACATGCACGAT--ACGTC-GCAATTGTTCGAAATCAAAATGTTTAGGACG 65973 ||||||| || | || | || || || ||| ||| ||| | | ||| Sbjct 228137 TCGTGTCATGACCTTTACCACCGACTTCAGC-----TTC----TCATAAT-TAAATGACT 228088 Query 65974 ATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGC 66033 || | | | | |||||||||||||||| | || || || ||||| || ||||| Sbjct 228087 TTC-----TTCTAGGCTCCACAAACTTGGGAAGCGAAACTGACGCAAGGTTACACACAGC 228033 Query 66034 TATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGT 66093 | ||||| | ||| ||||||| | ||||||||| || || | ||| ||| || Sbjct 228032 GACTTCGTCTCTGCCAGTAAACTCGACCACTTCGGTGCATAGGTTGCCGCATTTTATCGT 227973 Query 66094 GCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGT 66153 |||| ||||| || || ||||| |||||| || || ||||||||||| |||||||| Sbjct 227972 CCCCAGATTCTTCTGGTTGCTCTTCTTATTGCAAGCGTCTTTGTACATCATATACGGAGT 227913 Query 66154 GCCGGTCTC 66162 ||| || || Sbjct 227912 GCCTGTTTC 227904 Score = 131 bits (144), Expect = 1e-25 Identities = 303/453 (67%), Gaps = 14/453 (3%) Strand=Plus/Plus Query 65711 CAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGT 65770 ||||| | |||||| || || | || | | ||||||||| | ||| | | | Sbjct 190437 CAGCTTGCCTCGAGGGCAGCGTAGTATACGCATTCGAAAATGTTTTTATTTAATCTCCTG 190496 Query 65771 GCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAAC 65829 || || ||| ||| | || ||||| || || | || | ||| || ||||||||||| Sbjct 190497 GCTTCTGGGCTGTCGAAGGG-ATACCGCAGCATCATGAACGCGTCTGCGAGACCTTGAAC 190555 Query 65830 TCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTA 65889 || | ||||| ||||| || | || || | | ||| ||||| | ||||||||| Sbjct 190556 ACCCAGCCCGATCGGACGGTGCCTCAGGTTACTCCTGCGCGCTTCAGGGATAGGGTAGTA 190615 Query 65890 ATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTG 65949 || | ||||| | |||||||| |||||||||| | || | || | | | | || Sbjct 190616 GTTCCTGTCGATCACGCGATTCAGATTGCGTGTCGCGACTTTGACAACAGCTTTTAGTTT 190675 Query 65950 TTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGC 66009 ||| ||| ||| || || | | ||| || ||| |||| ||||||| Sbjct 190676 GTCGTAATTGAAAGTCTT----CGTT------TCCCGATCA--ACATACTTCGGAAGGGA 190723 Query 66010 AAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGT 66069 ||||| || | |||||||||||| | || || || ||||| |||||||| || Sbjct 190724 CAGAGACGCCAAGTTGCAGACAGCCACTTCATCCTTGCTGGCGTACTCAACAATTTCTGT 190783 Query 66070 GCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGC 66129 || | ||| || | |||||||| | |||| || || ||||| | |||||| || Sbjct 190784 ACATAAATTGCTACCTTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTTCTATTGCAGGC 190843 Query 66130 ATCCTTGTACATCATGTACGGAGTGCCGGTCTC 66162 |||||||||||||||||||| || || ||||| Sbjct 190844 GTCCTTGTACATCATGTACGGCGTCCCTGTCTC 190876 Score = 87.8 bits (96), Expect = 1e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| |||||||||||||| ||| ||||| || |||| | || || | Sbjct 227622 CATGAAAAGATCGGGTATCCAGAGGGCTCCGAACAGATCTCGAGCTCTACGTTCTTCCTT 227563 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 |||||| | || | || ||| | ||| || || |||||| |||||| || || || || Sbjct 227562 GCCGTGGCTCTTCCTCATGTCCAAGAAGTCGAAAATGTCGAAATGCCACGGCTCTAGATA 227503 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGC 66510 ||||| | |||| | || || || || || ||||| || || ||||| Sbjct 227502 TATGGCCATACTGCCCCTCCGCTTCCCACCCCCCTGGTCCACATACCGAGC 227452 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 65075 GAATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCG 65134 || || ||||| |||| ||||| | || || |||| ||||| || ||||||| || Sbjct 189573 GAGTCAACCGTAAACTTAATCGCGTCCGCCGCTGCCTGCGTCCTCAGGTAGTACAGTCCC 189632 Query 65135 GTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGC 65194 ||||| |||||||| | ||| | ||||||||||| | || | || || || | || Sbjct 189633 GTCTTTAGGCCAGCTCTCCAGCCGTAGAAATGCATTGTGGAAAGCTTGGCGTAGGTAGGG 189692 Query 65195 TCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCC 65254 | | || ||| || |||| |||||| || ||||| ||| | | | ||| |||| Sbjct 189693 TTGATCATATGAATGTTCAGCGACTGGGATTGGTCGATATAAGGCGCTCTGTCTACAGCG 189752 Query 65255 ATGTCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAG 65301 | ||| | || ||| | |||||||| || || |||||||| Sbjct 189753 AGGTCTAGAATCACACGCTGCTTGATCTCCCACACAGTTTTGTACAG 189799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397554132579680