Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stentor_20coeruleus_20[genbank_20GCA_5F001970955.1_202017-01-25] 2,628 sequences; 77,831,160 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2011 338 2e-90 seq9 205 3e-50 seq2276 91.5 4e-16 seq2398 89.7 2e-15 >seq2011 Length=686 Score = 338 bits (374), Expect = 2e-90 Identities = 345/442 (78%), Gaps = 35/442 (8%) Strand=Plus/Minus Query 4 CTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 ||||||||||| || |||| | ||||| | | ||||| ||||||||||||||| Sbjct 415 CTCATTCCAATCACGAGAC-----AAAGCCCCGCGTTGTTATTTCTTGTCACTACCTCCC 361 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 360 TGAATTAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCT 301 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||||||||||||||||||| |||| |||||| | ||||||||| | Sbjct 300 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCATTGCCATGGTAGTC 241 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAA 243 || || ||||||||||||| |||||||||||||| ||||||| || ||| || Sbjct 240 CAATACACTACCATCGAAAGCTGATAGGGCAGAAACTTGAATGCTTCACTTCCG----AA 185 Query 244 GGCCATGCGATTCGTTAAGTTATTATGAAT-CACCA-AGGAGCCCCGAAGGGCGTTGGTT 301 | | | |||| ||||||||||||| | | ||| |||| | | |||| | | Sbjct 184 G---AAG---TTCGCTAAGTTATTATGATTCCTCCACAGGATCTC----TCCCGTTAG-T 136 Query 302 TTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361 ||| |||||||||||| | || | | | | | ||||||||||||||||||| Sbjct 135 GTTTGTCTAATAAATAC------TACGCA---GAGCGTATCAGCATGTATTAGCTCTAGA 85 Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421 ||||| |||||||||||| || || | || ||||||||| ||||||| ||||||||| Sbjct 84 ATTACTACGGTTATCCATATA--AACTT--TAGCAAATAAACTATAACTGTTTTAATGAG 29 Query 422 CCATTCGCAGTTTCACTGTATA 443 ||||||||||| |||| ||||| Sbjct 28 CCATTCGCAGTCTCACCGTATA 7 >seq9 Length=26458 Score = 205 bits (226), Expect = 3e-50 Identities = 178/221 (81%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 4 CTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 ||||| | ||| || |||| | ||||| |||| ||||| || ||||| |||||| Sbjct 13160 CTCATCCAAATCACGAGAC-----AAAGCCCCGTATTGTTATTTTTTATCACTGCCTCCC 13106 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||| |||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 13105 TGAATTAAGATTAGGTAATTTAGGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCT 13046 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||||||||||||||||||| | || |||| | | ||||||||| | Sbjct 13045 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCTGTCACCCATCATTGCCATGGTAGTC 12986 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAA 224 || || ||| |||||||| |||||||||||||| ||||| Sbjct 12985 CAATACACTATCATCGAAAACTGATAGGGCAGAAACTTGAA 12945 Score = 77.0 bits (84), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||||| ||||| ||||||||||| ||||| ||| || || || | || |||||||| Sbjct 12810 AGCATGCATTAG-TCTAGAATTACTACGGTCATCTATATA--AACTT--TAGCAAATAAA 12756 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTT 434 | ||| ||| |||||||||||||| ||| ||| Sbjct 12755 CTATAGCTGTTTTAATGAGCCATTTGCAATTT 12724 >seq2276 Length=40295 Score = 91.5 bits (100), Expect = 4e-16 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 40295 TTATACTTAGACATGCATGGCTTAGTCTTTAAGACAAGCATATGACTACTGGCAG 40241 >seq2398 Length=34730 Score = 89.7 bits (98), Expect = 2e-15 Identities = 52/54 (96%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 451 TATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 34730 TATACTTAGACATGCATGGCTTAGTCTTTAAGACAAGCATATGACTACTGGCAG 34677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510360306688