Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sterkiella_20histriomuscorum_20[genbank_20GCA_5F001273305.2_202015- 12-23] 32,996 sequences; 66,368,609 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq28017 138 2e-30 seq28016 138 2e-30 seq28015 134 3e-29 seq28014 109 1e-21 >seq28017 Length=935 Score = 138 bits (152), Expect = 2e-30 Identities = 100/116 (86%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 79 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCT 138 |||||||||||||||||||||||| |||||||||||| |||||||| ||||| ||||| Sbjct 1 CTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCACCCTCT 60 Query 139 CAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 ||| || || |||| ||| ||||||||||| ||||||||||||||| |||||| Sbjct 61 CAGGCCCCCTAAAGATCATCGACTTGGTGAGCCGTTACCTCACCAACTATCTAATC 116 >seq28016 Length=1639 Score = 138 bits (152), Expect = 2e-30 Identities = 100/116 (86%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 79 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCT 138 |||||||||||||||||||||||| |||||||||||| |||||||| ||||| ||||| Sbjct 1 CTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCACCCTCT 60 Query 139 CAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 ||| || || |||| ||| ||||||||||| ||||||||||||||| |||||| Sbjct 61 CAGGCCCCCTAAAGATCATCGACTTGGTGAGCCGTTACCTCACCAACTATCTAATC 116 >seq28015 Length=1796 Score = 134 bits (148), Expect = 3e-29 Identities = 109/132 (83%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 79 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCT 138 |||||||||||||||||||||||| |||||||||||| |||||||| |||| ||||| Sbjct 1 CTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCTCCCTCT 60 Query 139 CAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 ||| | ||| ||||| |||||||| |||| |||||| |||||||||||||| ||| Sbjct 61 CAGGACCCCTACCCATCGTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGGGAC 120 Query 199 CTAGGCTCATCT 210 | |||||||| Sbjct 121 GCATGCTCATCT 132 >seq28014 Length=1051 Score = 109 bits (120), Expect = 1e-21 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 79 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCT 138 |||||||||||||||||||||||| |||||||||||| |||||||| | |||||||| Sbjct 1 CTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGGCCATCCTCT 60 Query 139 CAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 |||| | || |||| | ||||||| ||| ||||| | ||||||| ||||| Sbjct 61 CAGATCCCCTAGTCATCGCGGTCTTGGTGGGCCGTTACCCCGCCAACTAACTAAT 115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071646282880