Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sterkiella_20histriomuscorum_20[genbank_20GCA_5F001273305.2_202015- 12-23] 32,996 sequences; 66,368,609 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq28017 174 3e-41 seq28016 174 3e-41 seq28015 140 6e-31 seq28014 123 5e-26 >seq28017 Length=935 Score = 174 bits (192), Expect = 3e-41 Identities = 200/263 (76%), Gaps = 7/263 (3%) Strand=Plus/Plus Query 45 CTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCT 104 |||||||||||||||||||||||| |||||||||||| ||| ||||| | ||| ||||| Sbjct 1 CTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCACCCTCT 60 Query 105 CAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCC 164 ||| || ||| |||| ||| ||||||| || ||| ||||||||||| |||||| | Sbjct 61 CAGGCCCCCTAAAGATCATCGACTTGGTGAGCCGTTACCTCACCAACTATCTAATCTTGC 120 Query 165 GCGAGCCCATCTTTCAGCGA--TAAATCTTTGGTCAAAGAATGATGCCATCCTC-TGACA 221 ||| |||||||||| | | | | | | || | | | |||||||| ||| | | Sbjct 121 GCGTGCCCATCTTT-ATCCACCTCAGTTTTCAATTTCA-AGTGATGCCA--CTCAAAATA 176 Query 222 TTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCAC 281 ||||| ||||||| ||| |||| ||| | ||| || || ||||||||||||| ||| Sbjct 177 TTATGGGGTATTAATCTTCCTTTCGAAAGGCTATCCCCCTGATAAAGGCAGGTTGCACAC 236 Query 282 GTGTTACTCACCCGTCCGCCACT 304 ||||| | ||||||| |||| || Sbjct 237 GTGTTCCGCACCCGTACGCCGCT 259 >seq28016 Length=1639 Score = 174 bits (192), Expect = 3e-41 Identities = 200/263 (76%), Gaps = 7/263 (3%) Strand=Plus/Plus Query 45 CTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCT 104 |||||||||||||||||||||||| |||||||||||| ||| ||||| | ||| ||||| Sbjct 1 CTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCACCCTCT 60 Query 105 CAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCC 164 ||| || ||| |||| ||| ||||||| || ||| ||||||||||| |||||| | Sbjct 61 CAGGCCCCCTAAAGATCATCGACTTGGTGAGCCGTTACCTCACCAACTATCTAATCTTGC 120 Query 165 GCGAGCCCATCTTTCAGCGA--TAAATCTTTGGTCAAAGAATGATGCCATCCTC-TGACA 221 ||| |||||||||| | | | | | | || | | | |||||||| ||| | | Sbjct 121 GCGTGCCCATCTTT-ATCCACCTCAGTTTTCAATTTCA-AGTGATGCCA--CTCAAAATA 176 Query 222 TTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCAC 281 ||||| ||||||| ||| |||| ||| | ||| || || ||||||||||||| ||| Sbjct 177 TTATGGGGTATTAATCTTCCTTTCGAAAGGCTATCCCCCTGATAAAGGCAGGTTGCACAC 236 Query 282 GTGTTACTCACCCGTCCGCCACT 304 ||||| | ||||||| |||| || Sbjct 237 GTGTTCCGCACCCGTACGCCGCT 259 >seq28015 Length=1796 Score = 140 bits (154), Expect = 6e-31 Identities = 185/257 (72%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 45 CTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCT 104 |||||||||||||||||||||||| |||||||||||| ||| ||||| | || ||||| Sbjct 1 CTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCTCCCTCT 60 Query 105 CAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCC 164 ||| | ||||| ||||| | |||||| || ||| || |||||||| ||||| || | Sbjct 61 CAGGACCCCTACCCATCGTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGGGAC 120 Query 165 GCGAGCCCATCTTTCAGCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTA 224 || || ||||||||| || | |||| | | |||||||| | | | || Sbjct 121 GCATGCTCATCTTTCACCGTTGTGACTTTAATAATGTGCTGATGCCAACTCATTATGCTA 180 Query 225 TGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTG 284 || ||||||| |||| | ||| || || |||||||||| |||| ||| | Sbjct 181 TGAGGTATTAATCCAAATTTCTCTGGGCTATCCCTCTGTGAAAGGCAGATTGCATACGCG 240 Query 285 TTACTCACCCGTCCGCC 301 |||| ||||||| |||| Sbjct 241 TTACGCACCCGTGCGCC 257 >seq28014 Length=1051 Score = 123 bits (136), Expect = 5e-26 Identities = 184/259 (71%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 45 CTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCT 104 |||||||||||||||||||||||| |||||||||||| ||| ||||| | || ||||| Sbjct 1 CTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGGCCATCCTCT 60 Query 105 CAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCC 164 ||| | ||| |||| | |||||||||| ||| | | ||||||| ||||| | Sbjct 61 CAGATCCCCTAGTCATCGCGGTCTTGGTGGGCCGTTACCCCGCCAACTAACTAATGACAC 120 Query 165 GCGAGCCCATCTTTCAGCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTA 224 || |||||||| | |||||| |||| ||| ||| |||| || ||| ||| Sbjct 121 GCATGCCCATCTCCATCCTATAAATATTTGATCATTGAACCATGCGGCTCTGTGATTTTA 180 Query 225 TGCGGTATTAGCGTTCG--TTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACG 282 |||||| ||| | || |||| | ||| || | |||| ||||||| ||| Sbjct 181 TGCGGTGTTA--ATCCGAATTTCTTCGGGCTATCCCCCAGATGAAGGTAGGTTGCATACG 238 Query 283 TGTTACTCACCCGTCCGCC 301 ||||| ||||||| |||| Sbjct 239 CGTTACGCACCCGTGCGCC 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998070567936