Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sterkiella_20histriomuscorum_20[genbank_20GCA_5F001273305.2_202015- 12-23] 32,996 sequences; 66,368,609 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq28014 136 1e-29 seq28017 123 6e-26 seq28016 123 6e-26 seq28015 109 1e-21 >seq28014 Length=1051 Score = 136 bits (150), Expect = 1e-29 Identities = 99/115 (86%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||||||||||||||||||||| |||||||||||| ||||||||| || |||||||| Sbjct 1 CTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGGCCATCCTCT 60 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 |||| | |||| |||| | || |||||||| ||||||||||||||| ||||| Sbjct 61 CAGATCCCCTAGTCATCGCGGTCTTGGTGGGCCGTTACCCCGCCAACTAACTAAT 115 >seq28017 Length=935 Score = 123 bits (136), Expect = 6e-26 Identities = 97/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||||||||||||||||||||| |||||||||||| ||||||||| | ||| ||||| Sbjct 1 CTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCACCCTCT 60 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 ||| || ||| |||| ||| || |||| ||| ||||| | ||||||| |||||| Sbjct 61 CAGGCCCCCTAAAGATCATCGACTTGGTGAGCCGTTACCTCACCAACTATCTAATC 116 >seq28016 Length=1639 Score = 123 bits (136), Expect = 6e-26 Identities = 97/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||||||||||||||||||||| |||||||||||| ||||||||| | ||| ||||| Sbjct 1 CTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCACCCTCT 60 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 ||| || ||| |||| ||| || |||| ||| ||||| | ||||||| |||||| Sbjct 61 CAGGCCCCCTAAAGATCATCGACTTGGTGAGCCGTTACCTCACCAACTATCTAATC 116 >seq28015 Length=1796 Score = 109 bits (120), Expect = 1e-21 Identities = 93/115 (81%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||||||||||||||||||||| |||||||||||| ||||||||| | || ||||| Sbjct 1 CTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCTCCCTCT 60 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 ||| | ||| ||||| |||| ||| ||| ||||| ||||||||||||| Sbjct 61 CAGGACCCCTACCCATCGTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAAT 115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221996656896