Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sterkiella_20histriomuscorum_20[genbank_20GCA_5F001273305.2_202015-
12-23] 32,996 sequences; 66,368,609 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq28017 165 2e-38
seq28016 165 2e-38
seq28015 158 4e-36
seq28014 107 6e-21
>seq28017
Length=935
Score = 165 bits (182), Expect = 2e-38
Identities = 198/264 (75%), Gaps = 5/264 (2%)
Strand=Plus/Minus
Query 21 AGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATAC 80
||||||||| ||||||| | ||| |||| | |||||||| | || ||||| | |
Sbjct 261 AGAGCGGCGTACGGGTGCGGAACACGTGTGCAACCTGCCTTTATCAGGGGGATAGCCTTT 202
Query 81 CGAAAGGTATGCTAATACGAGATAATATACTTTTA-TCGCATGG-TAGAAGTATCAAAGC 138
||||||| | |||||| ||||||| ||| | | |||| | ||| | | ||| |
Sbjct 201 CGAAAGGAAGATTAATACCCCATAATAT--TTTGAGTGGCATCACTTGAAAT-TGAAAAC 145
Query 139 TCCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCA 198
| || || | ||| | | |||| |||||| |||||||| ||||||||||| ||||
Sbjct 144 TGAGGTGGATAAAGATGGGCACGCGCAAGATTAGATAGTTGGTGAGGTAACGGCTCACCA 85
Query 199 AGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGT 258
|| ||| |||| ||| | ||||||||||||||| ||||| ||| ||||||||||||
Sbjct 84 AGTCGATGATCTTTAGGGGGCCTGAGAGGGTGATCCCCCACACTGGTACTGAGACACGGA 25
Query 259 CCAAACTCCTACGGGAGGCAGCAG 282
||| ||||||||||||||||||||
Sbjct 24 CCAGACTCCTACGGGAGGCAGCAG 1
>seq28016
Length=1639
Score = 165 bits (182), Expect = 2e-38
Identities = 198/264 (75%), Gaps = 5/264 (2%)
Strand=Plus/Minus
Query 21 AGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATAC 80
||||||||| ||||||| | ||| |||| | |||||||| | || ||||| | |
Sbjct 261 AGAGCGGCGTACGGGTGCGGAACACGTGTGCAACCTGCCTTTATCAGGGGGATAGCCTTT 202
Query 81 CGAAAGGTATGCTAATACGAGATAATATACTTTTA-TCGCATGG-TAGAAGTATCAAAGC 138
||||||| | |||||| ||||||| ||| | | |||| | ||| | | ||| |
Sbjct 201 CGAAAGGAAGATTAATACCCCATAATAT--TTTGAGTGGCATCACTTGAAAT-TGAAAAC 145
Query 139 TCCGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCA 198
| || || | ||| | | |||| |||||| |||||||| ||||||||||| ||||
Sbjct 144 TGAGGTGGATAAAGATGGGCACGCGCAAGATTAGATAGTTGGTGAGGTAACGGCTCACCA 85
Query 199 AGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGT 258
|| ||| |||| ||| | ||||||||||||||| ||||| ||| ||||||||||||
Sbjct 84 AGTCGATGATCTTTAGGGGGCCTGAGAGGGTGATCCCCCACACTGGTACTGAGACACGGA 25
Query 259 CCAAACTCCTACGGGAGGCAGCAG 282
||| ||||||||||||||||||||
Sbjct 24 CCAGACTCCTACGGGAGGCAGCAG 1
>seq28015
Length=1796
Score = 158 bits (174), Expect = 4e-36
Identities = 192/262 (73%), Gaps = 0/262 (0%)
Strand=Plus/Minus
Query 21 AGAGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATAC 80
||| ||||| ||||||| ||||||||| | || ||||| | ||| | ||||| | |
Sbjct 262 AGACCGGCGCACGGGTGCGTAACGCGTATGCAATCTGCCTTTCACAGAGGGATAGCCCAG 203
Query 81 CGAAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTC 140
|||| | |||||| ||| ||| | | |||| | ||| ||||
Sbjct 202 AGAAATTTGGATTAATACCTCATAGCATAATGAGTTGGCATCAGCACATTATTAAAGTCA 143
Query 141 CGGCGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAG 200
| |||| | ||| | ||||| |||||||||||||||||||||||||||||||||
Sbjct 142 CAACGGTGAAAGATGAGCATGCGTCCCATTAGCTAGTTGGTAAGGTAACGGCTTACCAAG 83
Query 201 GCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCC 260
|| ||||| |||| | |||||||||| |||| ||||| ||| |||||||||||| ||
Sbjct 82 GCAACGATGGGTAGGGGTCCTGAGAGGGAGATCCCCCACACTGGTACTGAGACACGGACC 23
Query 261 AAACTCCTACGGGAGGCAGCAG 282
| ||||||||||||||||||||
Sbjct 22 AGACTCCTACGGGAGGCAGCAG 1
>seq28014
Length=1051
Score = 107 bits (118), Expect = 6e-21
Identities = 97/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220
|||| | ||||| ||||||| ||||||||| |||||| | |||| | ||| || |
Sbjct 122 GCGTGTCATTAGTTAGTTGGCGGGGTAACGGCCCACCAAGACCGCGATGACTAGGGGATC 63
Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280
||||||| || | ||||| ||| |||||||||||| ||| ||||||||||||||||||
Sbjct 62 TGAGAGGATGGCCCCCCACACTGGTACTGAGACACGGACCAGACTCCTACGGGAGGCAGC 3
Query 281 AG 282
||
Sbjct 2 AG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497105851904
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