Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sterkiella_20histriomuscorum_20[genbank_20GCA_5F001273305.2_202015- 12-23] 32,996 sequences; 66,368,609 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq27488 132 9e-29 >seq27488 Length=717 Score = 132 bits (146), Expect = 9e-29 Identities = 183/251 (73%), Gaps = 15/251 (6%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||||| | |||||||||||| | | |||||||||||||||| || ||||||| Sbjct 244 AGAGCACACAGGGGATGCCTTGGCTCTCAGAGGCGATGAAGGACGTGATAAGCTGCGATA 303 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| |||| | | |||||| | || ||||| ||||||||||||||||||||| Sbjct 304 AGCTTCGGGTA-TTAGCAAATATGAATTAATCCGAAGATTTCCGAATGGGGAAACC---- 358 Query 121 CCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAAC 180 ||| | ||| | || | | || ||| | || ||| | ||||||||||| Sbjct 359 ----TGGCTAGTTGAAGACT--AGTCGTA--TATAATACGCAAACCTGCCGAACTGAAAC 410 Query 181 ATCTAAGT-AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAA 239 |||||||| ||| | ||||| ||||| || |||| || |||||||||||||||||| Sbjct 411 ATCTAAGTAAGCAG-AGGAAGAGAAAATAATAATGATTTCCTAAGTAGTGGCGAGCGAAA 469 Query 240 TGGGATGAGCC 250 || | ||||| Sbjct 470 GGGAAAGAGCC 480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918096964736