Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sterkiella_20histriomuscorum_20[genbank_20GCA_5F001273305.2_202015- 12-23] 32,996 sequences; 66,368,609 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq28015 172 1e-40 seq28014 161 2e-37 seq28017 114 3e-23 seq28016 114 3e-23 >seq28015 Length=1796 Score = 172 bits (190), Expect = 1e-40 Identities = 154/193 (80%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||||||||||||||| ||| |||||||||||| ||| ||||||||| || ||||| Sbjct 1 CTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCTCCCTCT 60 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| ||||||| ||||||| | || ||| ||||||||| || |||| ||||||| || Sbjct 61 CAGGACCCCTACCCATCGTTGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATGGGAC 120 Query 285 GCATCCCCATCGTACACCGATGAATCTTTAATGATGATACCATGCAATCTCATCATACCA 344 |||| | |||| | ||||| || ||||||| ||| |||| | ||||| || | | Sbjct 121 GCATGCTCATCTTTCACCGTTGTGACTTTAATAATGTGCTGATGCCAACTCATTATGCTA 180 Query 345 TCAGGTATTAATC 357 | ||||||||||| Sbjct 181 TGAGGTATTAATC 193 >seq28014 Length=1051 Score = 161 bits (178), Expect = 2e-37 Identities = 137/166 (83%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||||||||||||||| ||| |||||||||||| ||| |||||||| || |||||| Sbjct 1 CTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGGCCATCCTCT 60 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 |||| |||||| ||||| | || ||||||||||||||||||| |||| |||||| || Sbjct 61 CAGATCCCCTAGTCATCGCGGTCTTGGTGGGCCGTTACCCCGCCAACTAACTAATGACAC 120 Query 285 GCATCCCCATCGTACA-CCGATGAATCTTTAATGATGATACCATGC 329 |||| |||||| | || || || ||| ||| || || ||||||| Sbjct 121 GCATGCCCATC-TCCATCCTATAAATATTTGATCATTGAACCATGC 165 >seq28017 Length=935 Score = 114 bits (126), Expect = 3e-23 Identities = 151/205 (74%), Gaps = 7/205 (3%) Strand=Plus/Plus Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||||||||||||||| ||| |||||||||||| ||| ||||||||| | ||||| Sbjct 1 CTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCACCCTCT 60 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| |||||| ||| | | || |||| ||||||||| | || |||| ||||| | Sbjct 61 CAGGCCCCCTAAAGATCATCGACTTGGTGAGCCGTTACCTCACCAACTATCTAATCTTGC 120 Query 285 GCATCCCCATCGTA---CACCGATGAATCTTTAATGATGATACCATGCAATCTCATCATA 341 || | |||||| | |||| | | | || ||| | | |||| | |||| ||| Sbjct 121 GCGTGCCCATCTTTATCCACC--TCAGTTTTCAATT-TCAAGTGATGCCA-CTCAAAATA 176 Query 342 CCATCAGGTATTAATCTTTCTTTCG 366 || |||||||||||| |||||| Sbjct 177 TTATGGGGTATTAATCTTCCTTTCG 201 >seq28016 Length=1639 Score = 114 bits (126), Expect = 3e-23 Identities = 151/205 (74%), Gaps = 7/205 (3%) Strand=Plus/Plus Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||||||||||||||| ||| |||||||||||| ||| ||||||||| | ||||| Sbjct 1 CTGCTGCCTCCCGTAGGAGTCTGGTCCGTGTCTCAGTACCAGTGTGGGGGATCACCCTCT 60 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| |||||| ||| | | || |||| ||||||||| | || |||| ||||| | Sbjct 61 CAGGCCCCCTAAAGATCATCGACTTGGTGAGCCGTTACCTCACCAACTATCTAATCTTGC 120 Query 285 GCATCCCCATCGTA---CACCGATGAATCTTTAATGATGATACCATGCAATCTCATCATA 341 || | |||||| | |||| | | | || ||| | | |||| | |||| ||| Sbjct 121 GCGTGCCCATCTTTATCCACC--TCAGTTTTCAATT-TCAAGTGATGCCA-CTCAAAATA 176 Query 342 CCATCAGGTATTAATCTTTCTTTCG 366 || |||||||||||| |||||| Sbjct 177 TTATGGGGTATTAATCTTCCTTTCG 201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068447338752