Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stylonychia_20lemnae_20[genbank_20GCA_5F000751175.1_202014-09-07] 19,840 sequences; 50,164,522 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq7211 104 2e-17 seq11890 98.7 8e-16 >seq7211 Length=2975 Score = 104 bits (114), Expect = 2e-17 Identities = 325/501 (65%), Gaps = 2/501 (0%) Strand=Plus/Plus Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 || || | ||| || ||||| |||||||| || ||||| || ||| |||| || ||| Sbjct 1328 AGTGCTATAGAAGCAAGGTTACAGACAGCAATTTCGTCTGGGCTAGTAAACTCTACGATT 1387 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 || || || ||||| | | ||| || | ||| ||||||||| || | || Sbjct 1388 TCAGTACAAAGATTCGAGGATTTTATACAACCAAGATTTTGTTGATTAGATTTTCTGTTA 1447 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 || | ||| ||||||| ||| || || || || || ||||||| || |||| || | Sbjct 1448 CAAGTATCTTTGTACAGCATATAGGGTGTCCCAGTTTCAACTTATGATTCAACAATCTAG 1507 Query 66185 TGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTC 66243 ||| || | ||||| | ||| | | | || | || |||||| | || Sbjct 1508 GTCCATAGCCATCTAGCCTTGATCGT-CTTTCTTCCTCGTCCGGAAATTTCGTACTCCTC 1566 Query 66244 GTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACA 66303 || || | || || || ||||| | | | | ||| || | || ||||| Sbjct 1567 ATAAAGTTTATCAAATTCCTCTCCCCAACATGTTGTTAATCCTGGGCATTCGTTGGGACA 1626 Query 66304 CATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAG 66363 ||||| | ||| || ||| || || || | | ||| |||| || || |||||||| Sbjct 1627 CATCAATGTCCAGTCTTCATTCTTCTCAACCCTTCTCATGAATAAGTCTGGAATCCAGAG 1686 Query 66364 GGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAG 66423 || ||||| ||||| | ||||| | ||| || | || ||||| || | | | || Sbjct 1687 AGCATAGAACAGATCTCTTGCTCTGTTCTCTTCTTTACCATGATTCTTTCTGAGTTGAAG 1746 Query 66424 GAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTT 66483 ||| || | || || |||||||||||||| | |||| || || | || | | ||| Sbjct 1747 GAAGTCGTAAATATCTGCATGCCATGGTTCAACATAGACTGCAAAAGCACCTTTTCTTTT 1806 Query 66484 GCCGCCACCTTGGTCGACGTA 66504 |||||| ||||| || || || Sbjct 1807 GCCGCCTCCTTGATCAACATA 1827 >seq11890 Length=3034 Score = 98.7 bits (108), Expect = 8e-16 Identities = 225/339 (66%), Gaps = 0/339 (0%) Strand=Plus/Plus Query 66298 TGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTAT 66357 |||||| | || | ||||||||| | | | ||| | ||| || ||||| || | Sbjct 1607 TGGACAGAAAAGAGTCCAATCACCGTTGTCTCTTACCCTCTTCATGAAAAGATCTGGAAC 1666 Query 66358 CCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAA 66417 |||||| || |||| | ||| | |||| || || || | || || || || | | Sbjct 1667 CCAGAGAGCAAAGAATAAATCTCTAGCTCTTTATTCTTCTTTTCCATGGTTCTTTCTGAG 1726 Query 66418 GTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCAT 66477 | ||||| ||||||| || ||||||||||| || | |||||| ||||| || ||| | Sbjct 1727 TTGAAGGAAGTCAAAGACATCAGCATGCCATGGCTCTAAGTAGATAGCGAATGAACCCTT 1786 Query 66478 ACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGG 66537 | || || ||||||||||| || || | ||| | ||||| || | | ||| || Sbjct 1787 TCTCTTTCCACCACCTTGGTCAACATATCTAGCAGTTTCATTGAAAACTCTGAGCATGGG 1846 Query 66538 TACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATC 66597 || || || || || | ||||| || || | |||| ||| || | |||| Sbjct 1847 AACAAGTCCATTTGAGTGTCCATTAGTTCCCTTGATGTAACTACCTGTGGCTCTGATATT 1906 Query 66598 GTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 ||||||| || |||| ||||| || |||| || || Sbjct 1907 GTGAACAGCAAGTCCAACTCCACCAGCACTCTTAGAAAT 1945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397471868057600