Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq757 286 5e-75 seq24 190 3e-46 seq961 156 6e-36 seq1272 143 4e-32 seq6276 123 4e-26 seq1119 111 2e-22 seq367 98.7 1e-18 seq559 93.3 6e-17 seq73 87.8 3e-15 seq8198 84.2 3e-14 seq93 78.8 1e-12 >seq757 Length=362603 Score = 286 bits (316), Expect = 5e-75 Identities = 205/232 (88%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| | |||||| |||||||||||||||||||||||| | Sbjct 281365 GTACAAAGGGCAGGGACGTAATCAGCACGAGCT-GATGACTCGCGCTTACTAGGAATT-C 281422 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 ||||||||||| ||| ||||||||||||||||||||||||||||| | ||| ||| |||| Sbjct 281423 CTCGTTGAAGATCAATAATTGCAATGATCTATCCCCATCACGATGCATTTTAAAAAGATT 281482 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||||| | | || | |||| | | ||||||||| |||||||||||||||||||| Sbjct 281483 ACCCGGCCATTTCAGGCAAGATTGCAAACTCGTTGAGCGCATCAGTGTAGCGCGCGTGCA 281542 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 281543 GCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTG 281594 >seq24 Length=1776169 Score = 190 bits (210), Expect = 3e-46 Identities = 150/177 (85%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 56 ATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA 115 ||| |||||||||||| ||| ||||||||||||||||||||||||||||| | || || Sbjct 1766193 ATTCCCTCGTTGAAGATCAATAATTGCAATGATCTATCCCCATCACGATGCATGTTACAA 1766134 Query 116 G-ATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGC 174 | ||||||||| | | || | |||| | | ||||||||| |||||||||||||||| Sbjct 1766133 GTATTACCCGGCCATTTCAGGCAAGATTGCAAACTCGTTGAGCGCATCAGTGTAGCGCGC 1766074 Query 175 GTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 |||| |||||| |||| ||||||||||||||||||||||||||||| ||||||| || Sbjct 1766073 GTGCAGCCCAGGACATTTAAGGGCATCACAGACCTGTTATTGCCTC-AACTTCCTTG 1766018 >seq961 Length=287327 Score = 156 bits (172), Expect = 6e-36 Identities = 178/234 (76%), Gaps = 19/234 (8%) Strand=Plus/Plus Query 3 ACAAAGGGCAGGGACGTAG---TCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTT 59 ||||| ||||||||| || ||| | | |||| |||||||||| ||| ||||||||| Sbjct 24106 ACAAAAAGCAGGGACGCAGCAATCAGCACAAGCT-GATGACTCGCACTTTCTAGGAATT- 24163 Query 60 CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT 119 ||||| ||||| ||| |||||||||||| |||||||| ||| || |||| Sbjct 24164 CCTCGGGGAAGATCAATAATTGCAATGATTTATCCCCAC---------ATT--AAGGATT 24212 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 | ||| | | || | |||| | | |||||| | | ||||||||||| | |||||| Sbjct 24213 AACCGTCCATTTCAGGCAAGATTGCAAACTCGT-GCGTGCATCAGTGTAGTGGGCGTGCA 24271 Query 180 GCCCAGAACATCTAAGGGCATCACA--GACCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||||| ||||||||| |||||||||||||||| ||||||| || Sbjct 24272 GCCCAGGACATCTAATGGCATCACAGCGACCTGTTATTGCCTCTAACTTCCTTG 24325 Score = 145 bits (160), Expect = 1e-32 Identities = 178/238 (75%), Gaps = 20/238 (8%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAG---TCAACGCGAGCTTGATGACTCGCGCTTACTAGGAAT 57 ||||||| || |||||| || ||| | | |||| |||||||||| ||| |||||||| Sbjct 25672 GTACAAAAAGCGGGGACGCAGCAATCAGCACAAGCT-GATGACTCGCACTTGCTAGGAAT 25730 Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA 117 | ||||| ||||| ||| |||||||||||| ||||| ||| ||| || || Sbjct 25731 T-CCTCGGGGAAGATCAATAATTGCAATGATTTATCCTCAT---------ATT--AAGGA 25778 Query 118 TTA--CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 ||| ||| | | || | |||| | | |||||||| | ||||||||||| | || Sbjct 25779 TTATACCCCTCCATTTCAGGCAAGATTGCAAACTCGTTGCGTGCATCAGTGTAGTGGTCG 25838 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACA--GACCTGTTATTGCCTCAAACTTCCGTG 231 ||| |||||| |||||||| ||||||||| || ||||||||||||| ||||||| || Sbjct 25839 TGCAGCCCAGGACATCTAATGGCATCACAGCGAGCTGTTATTGCCTCTAACTTCCTTG 25896 Score = 120 bits (132), Expect = 5e-25 Identities = 155/211 (73%), Gaps = 16/211 (8%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAG---TCAACGCGAGCTTGATGACTCGCGCTTACTAGGAAT 57 ||||||| ||||| |||| || ||| | | |||| |||||||||| ||| |||||||| Sbjct 26450 GTACAAAAGGCAGTGACGCAGCAATCAGCACAAGCT-GATGACTCGCACTTGCTAGGAAT 26508 Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA 117 | ||||| ||||| || |||||||||||| ||||| ||| | | || || Sbjct 26509 T-CCTCGGGGAAGATTAAGAATTGCAATGATTTATCCTCAT---------ACT--AAGGA 26556 Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 ||||||| | || | |||| | | |||||||| | |||||| || | | |||| Sbjct 26557 TTACCCGTGGTTTTCAGGCAAGATTGCAAACTCGTTGCGTGCATCAGCGTGGTGGACGTG 26616 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACC 208 | |||||| ||||| |||||||||||||||| Sbjct 26617 CAGCCCAGGACATCGAAGGGCATCACAGACC 26647 >seq1272 Length=185588 Score = 143 bits (158), Expect = 4e-32 Identities = 178/236 (75%), Gaps = 16/236 (7%) Strand=Plus/Plus Query 3 ACAAAGGGCAGGGACGTAG---TCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTT 59 ||||| ||||||||| | ||| | | |||| |||| ||||| ||| ||||||||| Sbjct 151107 ACAAAAAGCAGGGACGCGGCAATCAGCACAAGCT-GATGGCTCGCACTTGCTAGGAATT- 151164 Query 60 CCTCGTTGAAGACCAACA--ATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA 117 ||||| |||||| ||| | ||||||||||| ||| ||| ||| |||| || Sbjct 151165 CCTCGGTGAAGATCAATATAATTGCAATGATTTATAT--ATCCTCATG----TTCAG-GA 151217 Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 || |||| | | || | |||| | | |||||||| | ||||||||||| | |||| Sbjct 151218 TTGCCCGTCCATTTCAGGCAAGATTGCAAACTCGTTGCGTGCATCAGTGTAGTGGACGTG 151277 Query 178 CGGCCCAGAACATCTAAGGGCATCACA--GACCTGTTATTGCCTCAAACTTCCGTG 231 | |||||| |||||||||||||||||| ||| |||||||||||||||||||| || Sbjct 151278 CAGCCCAGGACATCTAAGGGCATCACAGCGACTTGTTATTGCCTCAAACTTCCTTG 151333 Score = 131 bits (144), Expect = 3e-28 Identities = 175/235 (74%), Gaps = 15/235 (6%) Strand=Plus/Plus Query 3 ACAAAGGGCAGGGACGTAG---TCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTT 59 ||||| ||||||||| | ||| | | |||| |||| ||||| ||| ||||||||| Sbjct 151881 ACAAAAAGCAGGGACGCGGCAATCAGCACAAGCT-GATGGCTCGCACTTGCTAGGAATT- 151938 Query 60 CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT 119 ||||| |||||| ||| |||||||||||| ||| ||| ||| |||| |||| Sbjct 151939 CCTCGGTGAAGATCAATAATTGCAATGATTTATAT--ATCCTCATG----TTCAG-GATT 151991 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | | || | |||| | | |||||||| | ||||||||||| | |||| Sbjct 151992 GCCCGTCCATTTCAGGCAAGATTGCAAACTCGTTGCGTGCATCAGTGTAGTGGATGTGCA 152051 Query 180 GCCCAGAACATCT-AAGGGCATCACA--GACCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||||||| |||| ||||| || |||||||||| || Sbjct 152052 GCCCAGGACATCTAAAGGGCATCACAGCGACCCGTTATGGCTTCAAACTTCCTTG 152106 Score = 80.6 bits (88), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 10/107 (9%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTA----GGAA 56 ||||| | ||||||||||| ||| | || ||| |||||||||| ||| ||| |||| Sbjct 151547 GTACAGAAAGCAGGGACGTAATCAGCACGTGCT-GATGACTCGCACTTGCTATATAGGAA 151605 Query 57 TTTCCTCGTTGAAGACCAACAATT----GCAATGATCTATCCCCATC 99 || ||||| |||||| ||| |||| |||||||||||||| |||| Sbjct 151606 TT-CCTCGGTGAAGATCAATAATTAATTGCAATGATCTATCCGCATC 151651 >seq6276 Length=1499 Score = 123 bits (136), Expect = 4e-26 Identities = 176/246 (72%), Gaps = 22/246 (9%) Strand=Plus/Plus Query 5 AAAGGGCAGGGACGTAGTCAACGCGAGCT--------TGATGACTCGCGCTTACTAGGAA 56 |||||||||||||| | | | | | ||| |||||||| || ||| ||||||| Sbjct 138 AAAGGGCAGGGACGAAATTAGCACAAGCAGATGACTCTGATGACTTGCACTTGCTAGGAA 197 Query 57 TTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT---CA 113 || ||||| || ||| | | |||||||| |||||||||||||||| || | ||| | Sbjct 198 TT-CCTCGCTGGAGATCGATAATTGCAAAGATCTATCCCCATCAC--TGCATTTTTCAAA 254 Query 114 AAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCG 173 || |||||||| | | || | |||| || | ||| |||| | | ||||| | || Sbjct 255 AATATTACCCGTCCATTTCAGGCAAGATGGCAAACTTTTTGAGCGCCTGAGTGTGGTGCA 314 Query 174 CGTGCGGCCCAGAACAT------CTAAGGGCATCACA--GACCTGTTATTGCCTCAAACT 225 ||||| |||| |||| |||||||||||||| ||||||| || |||||||||| Sbjct 315 CGTGCATGCCAGGACATCTAAGGCTAAGGGCATCACAGCGACCTGTCATCGCCTCAAACT 374 Query 226 TCCGTG 231 || || Sbjct 375 YCCTTG 380 >seq1119 Length=241322 Score = 111 bits (122), Expect = 2e-22 Identities = 176/251 (70%), Gaps = 31/251 (12%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT--------TGATGACTCGCGCTTACTA 52 |||||||||||||||||||| ||| | |||||| |||||||| || ||| ||| Sbjct 117454 GTACAAAGGGCAGGGACGTAATCAGCACGAGCTCACGACTCTGATGACTTGCACTTGCTA 117395 Query 53 GGAATTTCCTCGTTGAAGACCAACAAT---TGCAAT------GATCTATCCCCATCACGA 103 |||| ||||||| || ||| ||| ||| || || |||||||| || | ||| Sbjct 117394 GGAA-TTCCTCGCTGGAGATCAATAATATCTGTGATCGATCCGATCTATCTCCGTGGCGA 117336 Query 104 TGAAATTTCAAAGATT-----ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATA 158 || | || | ||||| ||| | | | || | |||| | | ||| ||||| Sbjct 117335 TGCATCTTGAGAGATTGGATGACCTGTCCATTTCAGGCAAGATTGCAAACTTGTTGAGCG 117276 Query 159 CATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA--GACCTGTTATTG 216 ||||||||| |||| | |||| |||||||||||||||||| || ||||| ||| Sbjct 117275 CATCAGTGT------GGTGCAGGCCAGGACATCTAAGGGCATCACAGCGATCTGTTGTTG 117222 Query 217 CCTCAAACTTC 227 |||||| |||| Sbjct 117221 CCTCAACCTTC 117211 >seq367 Length=617412 Score = 98.7 bits (108), Expect = 1e-18 Identities = 131/181 (72%), Gaps = 7/181 (4%) Strand=Plus/Minus Query 53 GGAATTTCCTCGTTGAAGACCAACAAT------TGCAATGATCTATCCCCATCACGATGA 106 |||||||| || ||||||| ||| ||| | || |||||| |||||| |||| Sbjct 52122 GGAATTTC-TCCTTGAAGATCAAGAATCAGAATTTCAGTGATCTGCACCCATCTTGATGC 52064 Query 107 AATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTG 166 | | ||||||||||| | | | || | ||| | | ||| |||| | || ||| | Sbjct 52063 ATATCAAAAGATTACCCAGCCATTTCAGGCAATATTGAAAACTTGTTGCGTGCAGCAGCG 52004 Query 167 TAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 226 ||||||| || |||||| ||| | || |||||||||||||||||| ||||||||||| Sbjct 52003 TAGCGCGATTGAAGCCCAGGACACCAAAAGGCATCACAGACCTGTTACAGCCTCAAACTT 51944 Query 227 C 227 | Sbjct 51943 C 51943 >seq559 Length=476907 Score = 93.3 bits (102), Expect = 6e-17 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 |||||||| | |||||||| |||| |||||| ||||| |||| ||| ||||||||||| Sbjct 338183 ACTCGTTGCGTGCATCAGTGCAGCGTGCGTGCAGCCCAAGACATGTAAAGGCATCACAGA 338242 Query 207 CCTGTTATTGCCTCAAACTTCCGT 230 |||||| |||| ||||| |||||| Sbjct 338243 CCTGTTCTTGCTTCAAAATTCCGT 338266 >seq73 Length=1261888 Score = 87.8 bits (96), Expect = 3e-15 Identities = 103/134 (77%), Gaps = 14/134 (10%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACG-----TAGTCAACGCGA-GCTTGATGACTCGCGCTTACTAGG 54 |||||||||||||||||| || ||| | ||| | ||||||||| |||||| ||| Sbjct 975440 GTACAAAGGGCAGGGACGTAATCTAATCAGCACGAGGGGCGATGACTCGTGCTTACAAGG 975499 Query 55 AATTTCCTCGTTGAAGACCA--ACAATTGCAATGATCTATCCCCATCACGATGAAATTTC 112 || |||||||||| ||| || |||||| |||| ||||||||||||||| | ||| Sbjct 975500 AA-TTCCTCGTTGCAGATCAATACAATTACAAT----CATCCCCATCACGATGGACTTTA 975554 Query 113 AA-AGATTACCCGG 125 || | | ||||||| Sbjct 975555 AACAAAGTACCCGG 975568 Score = 84.2 bits (92), Expect = 3e-14 Identities = 109/149 (73%), Gaps = 15/149 (10%) Strand=Plus/Plus Query 67 GAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATTACCCGG 125 || || ||| | ||||||||||| || ||||||||| ||||| || ||||||| ||| Sbjct 974852 GACGAGCAATACTTGCAATGATC----CCAATCACGATGCAATTTAAACAGATTACACGG 974907 Query 126 ACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGC---- 181 | | |||||| | ||||||||| || || || ||||||| || || Sbjct 974908 CCAGG-----CAAGGTTGCAAACTCGTTGAGCGCACCACTGGAGCGCGCACGCAGCTCAG 974962 Query 182 -CCAGAACATCTAAGGGCATCACAGACCT 209 |||| ||||||||||||||||||||||| Sbjct 974963 CCCAGGACATCTAAGGGCATCACAGACCT 974991 >seq8198 Length=1173 Score = 84.2 bits (92), Expect = 3e-14 Identities = 165/235 (70%), Gaps = 18/235 (8%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| ||||||||||| ||| | |||| |||||||||||||||||| ||| | ||| Sbjct 349 GTACAAAAAGCAGGGACGTAATCAGCACGAG-TTGATGACTCGCGCTTACGAGG-ACTTC 292 Query 61 CTCGTTGAAGACCAACA--ATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGA 117 |||||||| | ||| | ||| || | || | |||| | || | ||| ||||| Sbjct 291 GTCGTTGAA-ATCAATATCCCTGCCATCA-CTGGGCAAATCATGCTGCATTTTGAAAAGA 234 Query 118 -TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 ||||||| | | || | |||| | | ||||| ||| ||||||||||| || || Sbjct 233 TTTACCCGTTCATTTCAGGCAAGATTGCAAACTCGCTGAGCGCATCAGTGTAGTGCATGT 174 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 || || || ||| | ||| | | |||||||||||||||||| || Sbjct 173 GCAGCTCATCACA------GACAT----GTTCCATTATTGCCTCAAACTTCCTTG 129 >seq93 Length=1160758 Score = 78.8 bits (86), Expect = 1e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 171 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGT 230 |||||||| |||||| || ||||| ||||||||||||| || |||||||||||||||| | Sbjct 872548 GCGCGTGCAGCCCAGGACGTCTAACGGCATCACAGACCCGTGATTGCCTCAAACTTCCTT 872489 Query 231 G 231 | Sbjct 872488 G 872488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751929422920