Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq632 251 1e-64 seq1026 158 2e-36 seq343 158 2e-36 seq177 141 2e-31 >seq632 Length=425157 Score = 251 bits (278), Expect = 1e-64 Identities = 228/281 (81%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 40 TGCCCTTCACTGGGTG-TGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 ||| ||||| || ||| ||| || | ||||| ||| | ||| ||||||||||||| Sbjct 107712 TGCACTTCATTGTGTGGTGC--GGTATTTAGGACATTTTCCCTGAGGAAATTAGAGTGTT 107769 Query 99 CAAAGCAGGCCTTTGC-TCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 ||||| || |||| | ||||||||||||||||||||||| ||||||| | | |||| Sbjct 107770 TCAAGCAAGCGATTGCCTTGAATACATTAGCATGGAATAATAAGATAGGACCT-CAGTTC 107828 Query 158 TATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217 |||||||||||||||||| | | |||||| | ||||||||||| ||||| | ||| Sbjct 107829 TATTTTGTTGGTTTCTAGAGCTGAGGTAATGGTCGATAGGGATAGTTGGGGGCATTCGTA 107888 Query 218 TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTC 277 || || ||||||||||||||||||||||||| || ||||| |||||||||||||| || Sbjct 107889 TTTAACTGTCAGAGGTGAAATTCTTGGATTTGTTAAAGACGGACTACTGCGAAAGCATTT 107948 Query 278 ACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||||||||||| |||| |||||||||||||||| Sbjct 107949 GCCAAGGATGTTTTCATTGATCA-AGAACGAAAGTTAGGGG 107988 >seq1026 Length=264259 Score = 158 bits (174), Expect = 2e-36 Identities = 136/168 (81%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 154 GTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 |||||||||||||||||||||| | | |||||| | ||||||||||| ||||| | Sbjct 186889 GTTCTATTTTGTTGGTTTCTAGAGCTGAGGTAATGGTCGATAGGGATAGTTGGGGGCATT 186948 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 ||||| || || |||||||||||||||||||||| || |||| |||| ||||||||| Sbjct 186949 CGTATTGAACTGCCAGAGGTGAAATTCTTGGATTTGTTACAGACGGACTATTGCGAAAGC 187008 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGT---GAACGAAAGTTAGGGG 318 || ||||||||||||||||| || | |||||||||||||||| Sbjct 187009 ATTTGCCAAGGATGTTTTCATTGATTGATCAAGAACGAAAGTTAGGGG 187056 Score = 132 bits (146), Expect = 9e-29 Identities = 145/187 (78%), Gaps = 7/187 (4%) Strand=Plus/Plus Query 69 GGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGC-TCGAATACATTAG 127 |||| ||| ||| || ||||||||||||| ||||||| |||| | ||| |||| || Sbjct 180754 GGACATTTGCTT-GAGGAAATTAGAGTGTTTTGAGCAGGCGATTGCCTTGAAGACATGAG 180812 Query 128 CATGGAATAAT---AGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 |||| |||||| | ||||| | | | |||||||| |||||||||||| | | || Sbjct 180813 CATG-AATAATTTTAAGATAGGCCCT-CAGTTCTATTCCGTTGGTTTCTAGATCTGAGGT 180870 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 |||| | ||||||||||| ||||| | ||||| || ||||||||||||||||||||| Sbjct 180871 AATGGTCGATAGGGATAGTTGGGGGCATTCGTATTTAACTGTCAGAGGTGAAATTCTTGG 180930 Query 245 ATTTATT 251 |||| || Sbjct 180931 ATTTGTT 180937 >seq343 Length=641443 Score = 158 bits (174), Expect = 2e-36 Identities = 136/168 (81%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 154 GTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 |||||||||||||||||||||| | | |||||| | ||||||||||| ||||| | Sbjct 476653 GTTCTATTTTGTTGGTTTCTAGAGCTGAGGTAATGGTCGATAGGGATAGTTGGGGGCATT 476594 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 ||||| || || |||||||||||||||||||||| || |||| |||| ||||||||| Sbjct 476593 CGTATTGAACTGCCAGAGGTGAAATTCTTGGATTTGTTACAGACGGACTATTGCGAAAGC 476534 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGT---GAACGAAAGTTAGGGG 318 || ||||||||||||||||| || | |||||||||||||||| Sbjct 476533 ATTTGCCAAGGATGTTTTCATTGATTGATCAAGAACGAAAGTTAGGGG 476486 >seq177 Length=919663 Score = 141 bits (156), Expect = 2e-31 Identities = 132/165 (80%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 154 GTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 |||||||||||||||||||||| | | |||||| | |||||||| || ||||| | Sbjct 541469 GTTCTATTTTGTTGGTTTCTAGAGCTGAGGTAATGGTCGATAGGGATGGTTGGGGGCATT 541528 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 | || ||||||||||||| ||||||||| || ||||| |||||||||||||| Sbjct 541529 TGATTTTTTCTGTCAGAGGTGAACC-CTTGGATTTGTTAAAGACGGACTACTGCGAAAGC 541587 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||||||||||||||| ||| | |||||||||||||||| Sbjct 541588 ATTTGCCAAGGATGTTTTCATTGATC-GAGAACGAAAGTTAGGGG 541631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915111335424