Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1568 203 1e-49 seq21 203 1e-49 seq676 197 6e-48 seq489 159 1e-36 seq757 158 5e-36 seq1320 123 1e-25 seq569 123 1e-25 seq1238 102 3e-19 seq288 78.8 4e-12 >seq1568 Length=116476 Score = 203 bits (224), Expect = 1e-49 Identities = 213/279 (76%), Gaps = 11/279 (4%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| |||||||||||||||||||| || | ||| ||| | |||||||| Sbjct 72573 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAGCACTTGTGCAAGTTCTCAGGTGTCAA 72632 Query 465 ACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCG 524 ||| || ||| |||||| |||| | ||||| || ||||| | |||| Sbjct 72633 ACCTCTGTGCGCAATGAAGGTGACTGC---TGGGATTTTTTG------CACCAGCAACCG 72683 Query 525 ATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGT 584 | | || || ||| ||||||||||||||| |||| |||||||||||||||| Sbjct 72684 ACCA--ATCAATTGGGAGAAGTTTGAGTAAGAGCATGTGTGTTAGGACCCGAAAGATGGT 72741 Query 585 GAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCT 644 |||||||||||| |||| ||| ||| |||||||||| |||||||||| |||||| || Sbjct 72742 GAACTATGCCTGCGAAGGGCAAAGTCAGGGGAAACTCTGATGGAGGCTCGTAGCGGTACT 72801 Query 645 GGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||||||||||| |||||| | ||||||||||||||| Sbjct 72802 GACGTGCAAATCGTTCGTCATACGTGGGTATAGGGGCGA 72840 >seq21 Length=1804639 Score = 203 bits (224), Expect = 1e-49 Identities = 213/279 (76%), Gaps = 11/279 (4%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| |||||||||||||||||||| || | ||| ||| | |||||||| Sbjct 550831 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAGCACTTGTGCAAGTTCTCAGGTGTCAA 550890 Query 465 ACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCG 524 ||| || ||| |||||| |||| | ||||| || ||||| | |||| Sbjct 550891 ACCTCTGTGCGCAATGAAGGTGACTGC---TGGGATTTTTTG------CACCAGCAACCG 550941 Query 525 ATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGT 584 | | || || ||| ||||||||||||||| |||| |||||||||||||||| Sbjct 550942 ACCA--ATCAATTGGGAGAAGTTTGAGTAAGAGCATGTGTGTTAGGACCCGAAAGATGGT 550999 Query 585 GAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCT 644 |||||||||||| |||| ||| ||| |||||||||| |||||||||| |||||| || Sbjct 551000 GAACTATGCCTGCGAAGGGCAAAGTCAGGGGAAACTCTGATGGAGGCTCGTAGCGGTACT 551059 Query 645 GGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||||||||||| |||||| | ||||||||||||||| Sbjct 551060 GACGTGCAAATCGTTCGTCATACGTGGGTATAGGGGCGA 551098 >seq676 Length=402678 Score = 197 bits (218), Expect = 6e-48 Identities = 212/279 (76%), Gaps = 11/279 (4%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| |||||||||||||||||||| || | ||| ||| | |||||||| Sbjct 196528 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAGCACTTGTGCAAGTTCTCAGGTGTCAA 196469 Query 465 ACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCG 524 ||| || ||| |||||| |||| | ||||| || ||||| | |||| Sbjct 196468 ACCTCTGTGCGCAATGAAGGTGACTGC---TGGGATTTTTTG------CACCAGCAACCG 196418 Query 525 ATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGT 584 | | || || ||| ||||||||||||||| |||| |||||||||||||||| Sbjct 196417 ACCA--ATCAATTGGGAGAAGTTTGAGTAAGAGCATGTGTGTTAGGACCCGAAAGATGGT 196360 Query 585 GAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCT 644 |||||||||||| |||| ||| ||| |||||||||| |||||||||| |||||| || Sbjct 196359 GAACTATGCCTGCGAAGGGCAAAGTCAGGGGAAACTCTGATGGAGGCTCGTAGCGGTACT 196300 Query 645 GGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||||||||||| |||||| ||||||||||||||| Sbjct 196299 GACGTGCAAATCGTTCGTCATCCGTGGGTATAGGGGCGA 196261 >seq489 Length=521866 Score = 159 bits (176), Expect = 1e-36 Identities = 118/138 (86%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 ||||||||||||||| |||| |||||||| ||||||||||||||||||| |||| Sbjct 12437 TTTGAGTAAGAGCATGTGTGTTAGGACCCGATAGATGGTGAACTATGCCTGCGAAGGGCA 12496 Query 606 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665 ||| ||| |||||||||| |||||||||| |||||| ||| ||||||||||| |||||| Sbjct 12497 AAGTCAGGGGAAACTCTGATGGAGGCTCGTAGCGGTACTGACGTGCAAATCGTTCGTCAT 12556 Query 666 ATTTGGGTATAGGGGCGA 683 | ||||||||||||||| Sbjct 12557 ACGTGGGTATAGGGGCGA 12574 >seq757 Length=362603 Score = 158 bits (174), Expect = 5e-36 Identities = 203/279 (73%), Gaps = 11/279 (4%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| || |||||||||||| ||| ||| | ||| ||| | |||||||| Sbjct 280883 CGACCCGTCTTGAAATACGGACCAAGGAACCTAGCATTTGTGCAAGTTCTCAGGTGTCAA 280824 Query 465 ACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCG 524 ||| || ||| |||||| |||| | ||||| || ||||| | |||| Sbjct 280823 ACCTCTGTGCGCAATGAAGGTGACTGC---TGGGATTTTTTG------CACCAGCAACCG 280773 Query 525 ATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGT 584 | | || || ||| ||||||||||||||||| | || |||||||||| ||||| Sbjct 280772 ACCA--ATCAATTGGGAGAAATTTGAGTAAGAGCATATGTATTAGGACCCGAAAAATGGT 280715 Query 585 GAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCT 644 ||||||| ||| |||| ||| || |||||||| ||||| |||| |||||| || Sbjct 280714 GAACTATACCTACGAAGGGCAAAGTCAAGAGAAACTCTAATGGAGACTCGTAGCGGTACT 280655 Query 645 GGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||| |||||| | ||||||||||||||| Sbjct 280654 AACGTACAAATCGTTCGTCATACGTGGGTATAGGGGCGA 280616 >seq1320 Length=175091 Score = 123 bits (136), Expect = 1e-25 Identities = 114/143 (80%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 68 AAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGT 127 || |||| |||||||||| |||||||||||||| ||| |||||||||||| |||||| Sbjct 117170 AATTGGGTGGTAAATTTCATCTAAAGCTAAATACAGGCTCGAGACCGATAGCAAACAAGT 117229 Query 128 AGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTT 187 | ||| ||||||||||||| |||||| |||||||| | ||||| | |||||| | | Sbjct 117230 ACCATGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGCT-AAAAGTGCTTGAAATCGCT 117288 Query 188 GAAAGGGAAGCGCTTGCAACCAG 210 ||| ||||||| || ||| || Sbjct 117289 GAACTGGAAGCGAATGGAACTAG 117311 Score = 78.8 bits (86), Expect = 4e-12 Identities = 67/83 (81%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| |||||||||||||||||||| || | ||| ||| | |||||||| Sbjct 117427 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAGCACTTGTGCAAGTTCTCAGGTGTCAA 117368 Query 465 ACCCGTGCGCGTAATGAAAGTGA 487 ||| || ||| |||||| |||| Sbjct 117367 ACCTCTGTGCGCAATGAAGGTGA 117345 >seq569 Length=469691 Score = 123 bits (136), Expect = 1e-25 Identities = 114/143 (80%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 68 AAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGT 127 || |||| |||| ||||| |||||||||||||| ||| |||||||||||| |||||| Sbjct 206708 AATTGGGTGGTAGATTTCATCTAAAGCTAAATACAGGCTCGAGACCGATAGCAAACAAGT 206767 Query 128 AGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTT 187 | ||| ||||||||||||| |||||| |||||||||| ||||| | |||||| | | Sbjct 206768 ACCATGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTT-AAAAGTGCTTGAAATCGCT 206826 Query 188 GAAAGGGAAGCGCTTGCAACCAG 210 ||| ||||||| || ||| || Sbjct 206827 GAACTGGAAGCGAATGGAACTAG 206849 >seq1238 Length=195069 Score = 102 bits (112), Expect = 3e-19 Identities = 95/120 (79%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 52 TTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGA 111 |||| | || ||| || |||| |||||||||| ||||||||||| ||| |||| Sbjct 128322 TTGGAATTGGAGCGTAAATTGGGTGGTAAATTTCA---AAAGCTAAATACAGGCTCGAGA 128266 Query 112 CCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAA 171 |||||||| ||||||| ||| ||||||||||||| |||||| |||||||||||||| Sbjct 128265 CCGATAGCAAACAAGTACCATGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTTAAAA 128206 >seq288 Length=713084 Score = 78.8 bits (86), Expect = 4e-12 Identities = 64/78 (82%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 ||||||||||||| | |||| |||| ||||||||||||||||| ||||| |||| Sbjct 567570 TTTGAGTAAGAGCCTGTGTGTTAGGACACGAAAGATGGTGAACTAAGCCTGCGAAGGGCA 567629 Query 606 AAGCCAGAGGAAACTCTG 623 ||| ||| |||||||||| Sbjct 567630 AAGTCAGGGGAAACTCTG 567647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079792192400