Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq757 304 2e-80 seq93 197 2e-48 seq590 176 7e-42 seq354 154 2e-35 seq24 152 8e-35 seq910 134 2e-29 seq559 132 8e-29 seq1719 116 6e-24 seq343 116 6e-24 seq2 98.7 2e-18 seq1272 91.5 2e-16 seq961 87.8 3e-15 seq27 78.8 1e-12 seq988 73.4 6e-11 >seq757 Length=362603 Score = 304 bits (336), Expect = 2e-80 Identities = 215/245 (88%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 281524 TCAGTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCTC 281583 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG--T 133 |||||||| | | | || | | ||||||||||||||| ||| | | || | Sbjct 281584 AAACTTCCTTGCGTTAGACACACAAAGTCCCTCTAAGAAGTTGCCCATGTAACCGAGGTT 281643 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 281644 ACATGTAACTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCA 281703 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 281704 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 281763 Query 254 CTGTC 258 ||||| Sbjct 281764 CTGTC 281768 >seq93 Length=1160758 Score = 197 bits (218), Expect = 2e-48 Identities = 189/236 (80%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 26 GCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCAT 85 |||||||| |||||| || ||||| ||||||||||||| || |||||||||||||||| | Sbjct 872548 GCGCGTGCAGCCCAGGACGTCTAACGGCATCACAGACCCGTGATTGCCTCAAACTTCCTT 872489 Query 86 TGGCTGGAAGC-CA-ATAGTCCCTCTAAGAAGCCAGCCAC-CAACCATAGTCGATGGGGC 142 | || | || || | | |||| |||||| ||| ||||| || | | Sbjct 872488 GCGTTGCACGCACACAAAATCCCCTTAAGAAATTGCCCATGCAACCGATGTTACTAA--C 872431 Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 ||||||||||| ||||||||| ||||| | | | |||||||||| |||||||||||||| Sbjct 872430 TATTTAGCAGGCTAAGGTCTCTTTCGTGAAAG-ACTTAACCAGACCAATCACTCCACCAA 872372 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| | |||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 872371 CTAACAGCGGCCATGCACCACCAACCATAGAATCAAGAAAGAGCTGTCAATCTGTC 872316 >seq590 Length=453525 Score = 176 bits (194), Expect = 7e-42 Identities = 108/115 (94%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 144 ATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAAC 203 ||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||| Sbjct 269450 ATTTAGCAGGTTAGGGTCTCGTTCGTTAACGGAATTAGCCAGACAAATCGCTCCACCAAC 269391 Query 204 TAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || |||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 269390 TACGAACTGCCACGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 269336 >seq354 Length=631071 Score = 154 bits (170), Expect = 2e-35 Identities = 88/90 (98%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 269123 TTAACGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCA 269064 Query 229 ATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||||| Sbjct 269063 ATAGAATCAAGAAAGAGCTATCAATCTGTC 269034 >seq24 Length=1776169 Score = 152 bits (168), Expect = 8e-35 Identities = 170/221 (77%), Gaps = 21/221 (10%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||| Sbjct 1766087 TCAGTGTAGCGCGCGTGCAGCCCAGGACATTTAAGGGCATCACAGACCTGTTATTGCCTC 1766028 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA--GCCACCAACCATAGT 133 || ||||| | || | || | | | | ||| ||| | ||| | || Sbjct 1766027 AA-CTTCCTT--GC-----GTCA---GACACACAAAGTTGCCGATGTAACCGAGGTTAC- 1765980 Query 134 CGATGGGGCTATTTAGCAGGTTAAG----GTCTCGTTCGTTATCGGAATTAACCAGACAA 189 ||| ||||||||| ||||||| ||||||| ||||| ||||||| | ||||||| Sbjct 1765979 --ATGTAACTATTTAGCGGGTTAAGTAAGGTCTCGTGCGTTAACGGAATTCAACAGACAA 1765922 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCAT 230 |||||||| |||||| ||||||||||||| |||||||||| Sbjct 1765921 ATCACTCCGTCAACTAGGAACGGCCATGCA-CACCACCCAT 1765882 >seq910 Length=307805 Score = 134 bits (148), Expect = 2e-29 Identities = 99/115 (86%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||||||||||||||||| |||||||| ||| |||| || | ||| ||||||||||||| Sbjct 227827 CTATTTAGCAGGTTAAGATCTCGTTCATTAATGGAACTACTCGGACGAATCACTCCACCA 227886 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTG 256 ||||||||||||||||||||| | | | |||||||||||||||||||||||| Sbjct 227887 ACTAAGAACGGCCATGCACCATCTC----ATAATCAAGAAAGAGCTATCAATCTG 227937 >seq559 Length=476907 Score = 132 bits (146), Expect = 8e-29 Identities = 167/225 (74%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||| |||| |||||| ||||| |||| ||| ||||||||||| Sbjct 338183 ACTCGTTGCGTGCATCAGTGCAGCGTGCGTGCAGCCCAAGACATGTAAAGGCATCACAGA 338242 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||| |||| ||||| |||| || | | || | | | || ||||||| || Sbjct 338243 CCTGTTCTTGCTTCAAAATTCCGTTCGTTAGACACACAAATTC----TAAGAAGTTGCCC 338298 Query 122 AC-CAACCATAGTCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT- 178 | ||||| || || ||||||||||||||||| | ||||| | || || Sbjct 338299 ATGCAACCGAGGTTACATATCATAATTTAGCAGGTTAAGGTGTTGTTCGGGAGCGAAAAG 338358 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223 |||||||||||||||||||||||||||||| |||||| || |||| Sbjct 338359 TAACCAGACAAATCACTCCACCAACTAAGACCGGCCACGCGCCAC 338403 >seq1719 Length=87157 Score = 116 bits (128), Expect = 6e-24 Identities = 88/104 (85%), Gaps = 6/104 (6%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA------GACAAATCACT 195 |||||| |||||||||||||| |||||||| |||| |||| || ||||| |||| Sbjct 52172 CTATTTGGCAGGTTAAGGTCTTGTTCGTTAACGGACTTAATCATAATCAGACAAGTCACA 52231 Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 | ||| |||||||||||||||||||||||||||| ||||||||| Sbjct 52232 CTACCGACTAAGAACGGCCATGCACCACCACCCACAGAATCAAG 52275 >seq343 Length=641443 Score = 116 bits (128), Expect = 6e-24 Identities = 80/89 (90%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 162 TCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACC 221 ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 200495 TCGTTCGTTGACGGAATTAACATGACAAATCACTCCACCAACTAAGAACGGCCATGCACC 200554 Query 222 ACCACCCAT-AGAATCAAGAAAGAGCTAT 249 ||||||||| | || ||| || ||||||| Sbjct 200555 ACCACCCATAATAAACAACAAGGAGCTAT 200583 >seq2 Length=2740909 Score = 98.7 bits (108), Expect = 2e-18 Identities = 135/184 (73%), Gaps = 11/184 (6%) Strand=Plus/Plus Query 22 TAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 81 ||| | |||||| ||| | |||| ||||||| ||| ||||||| ||||| | | || Sbjct 1076021 TAGTGTGCGTGCAGCC--GGCCATCAAAGGGCAATACAAACCTGTTGCTGCCTTAGA-TT 1076077 Query 82 CCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACC-AACCATAGTCG----- 135 || | ||||||| | | |||| |||||||||| || |||| |||| Sbjct 1076078 CCTTGGGCTGGACACACAAGGTCCATCTAAGAAGCTGCGCATGTAACCGAGGTCGGTTAC 1076137 Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTAT--CGGAATTAACCAGACAAATCA 193 |||| ||||||||||||||| ||||| | ||||||| ||||||| |||||||||||| Sbjct 1076138 ATGGAACTATTTAGCAGGTTAGGGTCTGGCTCGTTATAACGGAATTGCCCAGACAAATCA 1076197 Query 194 CTCC 197 |||| Sbjct 1076198 CTCC 1076201 >seq1272 Length=185588 Score = 91.5 bits (100), Expect = 2e-16 Identities = 71/84 (85%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACA-- 59 ||||| || | | ||||||||| | ||||| |||||| |||||||||||||||||| Sbjct 151247 ACTCGTTGCGTGCATCAGTGTAGTGGACGTGCAGCCCAGGACATCTAAGGGCATCACAGC 151306 Query 60 GACCTGTTATTGCCTCAAACTTCC 83 ||| |||||||||||||||||||| Sbjct 151307 GACTTGTTATTGCCTCAAACTTCC 151330 >seq961 Length=287327 Score = 87.8 bits (96), Expect = 3e-15 Identities = 62/70 (89%), Gaps = 2/70 (3%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG--ACCTGTTATTGCC 73 ||||||||| | |||||| |||||| |||||||| |||||||||| ||||||||||||| Sbjct 24253 TCAGTGTAGTGGGCGTGCAGCCCAGGACATCTAATGGCATCACAGCGACCTGTTATTGCC 24312 Query 74 TCAAACTTCC 83 || ||||||| Sbjct 24313 TCTAACTTCC 24322 Score = 82.4 bits (90), Expect = 1e-13 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG- 60 ||||| || | | ||||||||| | ||||| |||||| |||||||| |||||||||| Sbjct 25810 ACTCGTTGCGTGCATCAGTGTAGTGGTCGTGCAGCCCAGGACATCTAATGGCATCACAGC 25869 Query 61 -ACCTGTTATTGCCTCAAACTTCC 83 | ||||||||||||| ||||||| Sbjct 25870 GAGCTGTTATTGCCTCTAACTTCC 25893 >seq27 Length=1712659 Score = 78.8 bits (86), Expect = 1e-12 Identities = 71/91 (78%), Gaps = 9/91 (10%) Strand=Plus/Minus Query 177 ATTAACCAGACAAATCACTCCACCAACTAAG---------AACGGCCATGCACCACCACC 227 ||| || ||| |||||||||||||||| || |||||| ||||| ||||||| Sbjct 303702 ATTCACGCGACGAATCACTCCACCAACTCAGTGCACTCAGAACGGCAATGCAGCACCACC 303643 Query 228 CATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||||||||||||||| |||||||||| Sbjct 303642 CGCGGAATCAAGAAAGAGCTGTCAATCTGTC 303612 >seq988 Length=275519 Score = 73.4 bits (80), Expect = 6e-11 Identities = 76/100 (76%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| |||||| || || | ||| |||||||| |||||||||| ||||||| Sbjct 147555 TCAGTGTAGCCAGCGTGCAGCAGAGGATGTCTGAGGGCATCGCAGACCTGTTCTTGCCTC 147496 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAG 115 |||| ||| | | | || | |||||||| |||||| Sbjct 147495 AAACCTCCTTGCGTTAGACACACCAAGTCCCTCCAAGAAG 147456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796725218328