Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq632 145 8e-33 seq1026 104 2e-20 seq343 80.6 3e-13 >seq632 Length=425157 Score = 145 bits (160), Expect = 8e-33 Identities = 146/186 (78%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 7 AGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGC-TCGAATACATTA 65 ||||| ||| | ||| ||||||||| ||| ||||| || |||| | |||||||||| Sbjct 107739 AGGACATTTTCCCTGAGGAAATTAGAGTGTTTCAAGCAAGCGATTGCCTTGAATACATTA 107798 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTA 125 |||||||||||| ||||||| | | |||||||||||| ||||||||| | | ||| Sbjct 107799 GCATGGAATAATAAGATAGGACCT-CAGTTCTATTTTGTTGGTTTCTAGAGCTGAG-GTA 107856 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||| | ||| ||||||| ||||| | ||||| || ||||| |||||||||||||||| Sbjct 107857 ATGGTCGATAGGGATAGTTGGGGGCATTCGTATTTAACTGTCAGAGGTGAAATTCTTGGA 107916 Query 186 TTTATT 191 ||| || Sbjct 107917 TTTGTT 107922 >seq1026 Length=264259 Score = 104 bits (114), Expect = 2e-20 Identities = 140/188 (74%), Gaps = 8/188 (4%) Strand=Plus/Plus Query 8 GGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGC-TCGAATACATTAC 66 |||| ||| ||| || ||||||||| ||| ||||||| |||| | ||| |||| | Sbjct 180754 GGACATTTGCTT-GAGGAAATTAGAGTGTTTTGAGCAGGCGATTGCCTTGAAGACATGAG 180812 Query 67 CATGGAATAAT---AGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG 123 |||| |||||| | ||||| | | | |||||||| || ||||||||| | | | Sbjct 180813 CATG-AATAATTTTAAGATAGGCCCT-CAGTTCTATTCCGTTGGTTTCTAGATCTGAG-G 180869 Query 124 TAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTG 183 ||||| | ||| ||||||| ||||| | ||||| || ||||| |||||||||||||| Sbjct 180870 TAATGGTCGATAGGGATAGTTGGGGGCATTCGTATTTAACTGTCAGAGGTGAAATTCTTG 180929 Query 184 GATTTATT 191 ||||| || Sbjct 180930 GATTTGTT 180937 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/99 (79%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 93 GTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGT 152 |||||||||||| ||||||||| | | |||||| | ||| ||||||| ||||| | Sbjct 186889 GTTCTATTTTGTTGGTTTCTAGAGCTGAG-GTAATGGTCGATAGGGATAGTTGGGGGCAT 186947 Query 153 CAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTATT 191 ||||| || || || ||||||||||||||||||| || Sbjct 186948 TCGTATTGAACTGCCAGAGGTGAAATTCTTGGATTTGTT 186986 >seq343 Length=641443 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/99 (79%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 93 GTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGT 152 |||||||||||| ||||||||| | | |||||| | ||| ||||||| ||||| | Sbjct 476653 GTTCTATTTTGTTGGTTTCTAGAGCTGAG-GTAATGGTCGATAGGGATAGTTGGGGGCAT 476595 Query 153 CAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTATT 191 ||||| || || || ||||||||||||||||||| || Sbjct 476594 TCGTATTGAACTGCCAGAGGTGAAATTCTTGGATTTGTT 476556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511951947520