Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq757 282 8e-74 seq24 161 2e-37 seq961 138 2e-30 seq1272 125 1e-26 seq6276 111 3e-22 seq559 82.4 1e-13 seq73 80.6 5e-13 seq93 78.8 2e-12 seq367 75.2 2e-11 >seq757 Length=362603 Score = 282 bits (312), Expect = 8e-74 Identities = 256/317 (81%), Gaps = 13/317 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGC--CAGG----CCCGCTTTGGCGGGTCGCCGGCT 73 || ||||||||||||||||||||||| || | | || || ||| | || Sbjct 281677 GAACGAGACCTTAACCTGCTAAATAGTTACATGTAACCTCGGTTACATGGG----CAACT 281622 Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||| | | || | | | |||||||||||||||||||||||||||||| Sbjct 281621 TCTTAGAGGGACTTTGTGTGTCTAACGCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 281562 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGC-CAACGAGTTCATCAC 191 |||||||||||| |||||| |||||||||||||||||| | || ||||||||| | Sbjct 281561 GCCCTTAGATGTCCTGGGCTGCACGCGCGCTACACTGAT-GCGCTCAACGAGTTTGCAAT 281503 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 |||| | | || | | |||||||||| ||||| | ||||| |||||||||| |||||| Sbjct 281502 CTTGCCTGAAATGGCCGGGTAATCTTTTTAAAATGCATCGTGATGGGGATAGATCATTGC 281443 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 |||||||| ||||||||||||||| ||||||||||||| ||||||||| || | |||||| Sbjct 281442 AATTATTGATCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGTGCTGATTA 281383 Query 312 CGTCCCTGCCCTTTGTA 328 ||||||||||||||||| Sbjct 281382 CGTCCCTGCCCTTTGTA 281366 >seq24 Length=1776169 Score = 161 bits (178), Expect = 2e-37 Identities = 143/172 (83%), Gaps = 5/172 (3%) Strand=Plus/Plus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 ||||||| ||||||||||||||||||||||||||||| |||| |||||| |||||||||| Sbjct 1766021 GGAAGTT-GAGGCAATAACAGGTCTGTGATGCCCTTAAATGTCCTGGGCTGCACGCGCGC 1766079 Query 163 TACACTGACAGAGC-CAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAAT-CTTGTT 220 |||||||| | || ||||||||| | |||| | | || | | ||||||| |||| | Sbjct 1766080 TACACTGA-TGCGCTCAACGAGTTTGCAATCTTGCCTGAAATGGCCGGGTAATACTTG-T 1766137 Query 221 AAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGG 272 || | ||||| |||||||||| |||||||||||||| |||||||||||| Sbjct 1766138 AACATGCATCGTGATGGGGATAGATCATTGCAATTATTGATCTTCAACGAGG 1766189 >seq961 Length=287327 Score = 138 bits (152), Expect = 2e-30 Identities = 171/230 (74%), Gaps = 18/230 (8%) Strand=Plus/Minus Query 103 GGAAGTTTGAGGCAATAACAGGT--CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGC 160 ||||||| ||||||||||||||| |||||||||| |||||||| |||||| |||||| | Sbjct 24322 GGAAGTTAGAGGCAATAACAGGTCGCTGTGATGCCATTAGATGTCCTGGGCTGCACGCCC 24263 Query 161 GCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTT 220 ||||||||| | | ||||||| | |||| | | || | || ||||| || Sbjct 24262 ACTACACTGA-TGCACGCACGAGTTTGCAATCTTGCCTGAAATGGACGGTTAATC--CTT 24206 Query 221 AAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTA 280 || || |||||||| | |||||||||||||| ||||| |||||||| |||| Sbjct 24205 AA----TG------TGGGGATAAATCATTGCAATTATTGATCTTCCCCGAGGAATTCCTA 24156 Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGAT---TACGTCCCTGCCCTTTGT 327 | ||| ||| ||||||||| | | |||| | ||||||||| ||||| Sbjct 24155 GAAAGTGCGAGTCATCAGCTTGTGCTGATTGCTGCGTCCCTGCTTTTTGT 24106 Score = 123 bits (136), Expect = 5e-26 Identities = 166/231 (72%), Gaps = 15/231 (6%) Strand=Plus/Minus Query 103 GGAAGTTTGAGGCAATAACAGGT--CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGC 160 ||||||| ||||||||||||| | |||||||||| |||||||| |||||| ||||| | Sbjct 25893 GGAAGTTAGAGGCAATAACAGCTCGCTGTGATGCCATTAGATGTCCTGGGCTGCACGACC 25834 Query 161 GCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTT 220 ||||||||| | ||||||||| | |||| | | || | ||||| | || Sbjct 25833 ACTACACTGATGCACGCAACGAGTTTGCAATCTTGCCTGAAATGGAGGGGTATAATCCTT 25774 Query 221 AAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTA 280 || || ||||| | |||||||||||||| ||||| |||||||| |||| Sbjct 25773 AA----------TATGAGGATAAATCATTGCAATTATTGATCTTCCCCGAGGAATTCCTA 25724 Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGAT---TACGTCCCTGCCCTTTGTA 328 | ||| ||| ||||||||| | | |||| | |||||| || |||||| Sbjct 25723 GCAAGTGCGAGTCATCAGCTTGTGCTGATTGCTGCGTCCCCGCTTTTTGTA 25673 Score = 78.8 bits (86), Expect = 2e-12 Identities = 78/101 (77%), Gaps = 10/101 (10%) Strand=Plus/Minus Query 238 GGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAAT---------GCCTAGTAAGCGC 288 ||||||| |||||||||||||| ||||| |||||||| ||||| ||| || Sbjct 24489 GGATAGATCATTGCAATTATTGATCTTCGCCGAGGAATTCCTAGCAGCCCTAGCAAGTGC 24430 Query 289 GTGTCATCAGCACGCGTTGATTACGT-CCCTGCCCTTTGTA 328 | |||||||||||| | ||||||||| |||||| | |||| Sbjct 24429 GAGTCATCAGCACGTGCTGATTACGTGCCCTGCTTTCTGTA 24389 >seq1272 Length=185588 Score = 125 bits (138), Expect = 1e-26 Identities = 170/232 (73%), Gaps = 15/232 (6%) Strand=Plus/Minus Query 103 GGAAGTTTGAGGCAATAACAGGTC--TGTGATGCCCTTAGATGTTCTGGGCCGCACGCGC 160 |||||||||||||||||||| ||| |||||||||||||||||| |||||| ||||| | Sbjct 151330 GGAAGTTTGAGGCAATAACAAGTCGCTGTGATGCCCTTAGATGTCCTGGGCTGCACGTCC 151271 Query 161 GCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTT 220 ||||||||| | ||||||||| | |||| | | || | ||| |||| || Sbjct 151270 ACTACACTGATGCACGCAACGAGTTTGCAATCTTGCCTGAAATGGACGGGCAATCCTG-- 151213 Query 221 AAACTCTGTCGTGCTGGGGATAGAGCATTGCAAT--TATTGCTCTTCAACGAGGAATGCC 278 ||| || | | ||| | ||||||||| ||||| |||||| |||||||| || Sbjct 151212 -AAC-ATGAGGATAT----ATAAATCATTGCAATTATATTGATCTTCACCGAGGAATTCC 151159 Query 279 TAGTAAGCGCGTGTCATCAGCACGCGTTGATT---ACGTCCCTGCCCTTTGT 327 ||| ||| ||| | ||||||| | | ||||| ||||||||| ||||| Sbjct 151158 TAGCAAGTGCGAGCCATCAGCTTGTGCTGATTGCCGCGTCCCTGCTTTTTGT 151107 Score = 114 bits (126), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 14/231 (6%) Strand=Plus/Minus Query 103 GGAAGTTTGAGGCAATAACAGGTC--TGTGATGCCCTT-AGATGTTCTGGGCCGCACGCG 159 |||||||||| || ||||| |||| |||||||||||| |||||| |||||| |||| Sbjct 152103 GGAAGTTTGAAGCCATAACGGGTCGCTGTGATGCCCTTTAGATGTCCTGGGCTGCACATC 152044 Query 160 CGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGT 219 | ||||||||| | ||||||||| | |||| | | || | ||| |||| || Sbjct 152043 CACTACACTGATGCACGCAACGAGTTTGCAATCTTGCCTGAAATGGACGGGCAATCCTG- 151985 Query 220 TAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCT 279 ||| || | | ||| | |||||||||||||| |||||| |||||||| ||| Sbjct 151984 --AACA-TGAGGATAT----ATAAATCATTGCAATTATTGATCTTCACCGAGGAATTCCT 151932 Query 280 AGTAAGCGCGTGTCATCAGCACGCGTTGATT---ACGTCCCTGCCCTTTGT 327 || ||| ||| | ||||||| | | ||||| ||||||||| ||||| Sbjct 151931 AGCAAGTGCGAGCCATCAGCTTGTGCTGATTGCCGCGTCCCTGCTTTTTGT 151881 Score = 87.8 bits (96), Expect = 3e-15 Identities = 81/102 (79%), Gaps = 8/102 (8%) Strand=Plus/Minus Query 235 TGGGGATAGAGCATTGCAATTA----TTGCTCTTCAACGAGGAATGCCTA----GTAAGC 286 || ||||||| ||||||||||| ||| |||||| |||||||| |||| | ||| Sbjct 151649 TGCGGATAGATCATTGCAATTAATTATTGATCTTCACCGAGGAATTCCTATATAGCAAGT 151590 Query 287 GCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| |||||||||||| | ||||||||||||||| | |||| Sbjct 151589 GCGAGTCATCAGCACGTGCTGATTACGTCCCTGCTTTCTGTA 151548 >seq6276 Length=1499 Score = 111 bits (122), Expect = 3e-22 Identities = 170/241 (71%), Gaps = 19/241 (8%) Strand=Plus/Minus Query 103 GGAAGTTTGAGGCAATAACAGGT--CTGTGATGC------CCTTAGATGTTCTGGGCCGC 154 || |||||||||| || |||||| ||||||||| |||||||||| |||| || Sbjct 377 GGRAGTTTGAGGCGATGACAGGTCGCTGTGATGCCCTTAGCCTTAGATGTCCTGGCATGC 318 Query 155 ACGCGCGCTACACTGACAGAGC-CAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAA 213 ||| || | ||||| | | || ||| |||| || |||| | | || | |||||| Sbjct 317 ACGTGCACCACACTCA-GGCGCTCAAAAAGTTTGCCATCTTGCCTGAAATGGACGGGTAA 259 Query 214 TCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGA 273 | || || || || ||| |||||||||| | |||||||||| | ||| || |||||| Sbjct 258 TATTTTTGAAAAATGCAGTGATGGGGATAGATCTTTGCAATTATCGATCTCCAGCGAGGA 199 Query 274 ATGCCTAGTAAGCGC---------GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 || ||||| ||| || | |||||| || | | | ||| ||||||||||||| Sbjct 198 ATTCCTAGCAAGTGCAAGTCATCAGAGTCATCTGCTTGTGCTAATTTCGTCCCTGCCCTT 139 Query 325 T 325 | Sbjct 138 T 138 >seq559 Length=476907 Score = 82.4 bits (90), Expect = 1e-13 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 |||| ||||| |||| ||||||||||||||||| ||| |||| ||||| |||||| ||| Sbjct 338264 GGAATTTTGAAGCAAGAACAGGTCTGTGATGCCTTTACATGTCTTGGGCTGCACGCACGC 338205 Query 163 TACACTGACAGAGCCAACGAGTT 185 | |||||| | ||||||||| Sbjct 338204 TGCACTGATGCACGCAACGAGTT 338182 >seq73 Length=1261888 Score = 80.6 bits (88), Expect = 5e-13 Identities = 96/130 (74%), Gaps = 13/130 (10%) Strand=Plus/Minus Query 208 GGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT--ATTGCTCTTC 265 ||||| | | ||||| || ||||| ||||||| |||| |||| |||| ||| | Sbjct 975566 GGGTACTTTGTTTAAAGTCCATCGTGATGGGGATG----ATTGTAATTGTATTGATCTGC 975511 Query 266 AACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG-------TTGATTACGTCCCT 318 |||||||||| ||| |||||| || |||||| | | || | |||||||||||| Sbjct 975510 AACGAGGAATTCCTTGTAAGCACGAGTCATCGCCCCTCGTGCTGATTAGATTACGTCCCT 975451 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 975450 GCCCTTTGTA 975441 >seq93 Length=1160758 Score = 78.8 bits (86), Expect = 2e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGC 160 |||||||||||||||| || ||||||||||||| ||||| || |||||| |||||||| Sbjct 872491 GGAAGTTTGAGGCAATCACGGGTCTGTGATGCCGTTAGACGTCCTGGGCTGCACGCGC 872548 >seq367 Length=617412 Score = 75.2 bits (82), Expect = 2e-11 Identities = 85/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 104 GAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCT 163 |||||||||||| |||||||||||||||||| || | ||| |||||| || |||||| Sbjct 51943 GAAGTTTGAGGCTGTAACAGGTCTGTGATGCCTTTTGGTGTCCTGGGCTTCAATCGCGCT 52002 Query 164 ACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTT 217 || ||| | |||| |||| | ||| | | || | |||||||||||| Sbjct 52003 ACGCTGCTGCACGCAACAAGTTTTCAATATTGCCTGAAATGGCTGGGTAATCTT 52056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947108235264