Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1843 235 2e-59 seq119 221 4e-55 seq555 154 4e-35 seq632 136 1e-29 seq143 136 1e-29 seq2389 104 7e-20 seq223 100 9e-19 seq1119 96.9 1e-17 seq1266 91.5 4e-16 seq623 89.7 2e-15 >seq1843 Length=67670 Score = 235 bits (260), Expect = 2e-59 Identities = 221/274 (81%), Gaps = 13/274 (5%) Strand=Plus/Plus Query 113 TAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA 172 ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| | Sbjct 62146 TAGCCGTTTCTCAGGCTCCCTCTCCGGAATCAAACCCTAATTCTCCGTTACCCGTCATTG 62205 Query 173 CCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCAT 232 ||| |||||||| || |||||| ||| ||| ||||||| |||||| ||||| || ||| Sbjct 62206 CCACGGTAGGCCCATACCCTACCGTCGGAAGCTGATAGGTCAGAAACTTGAAAGATGCAT 62265 Query 233 CGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCAC--CAAGGAGCCCCGAA 290 || |||| ||| |||| |||||| | |||||| ||||||||| ||| || || | Sbjct 62266 CGTCGGC-CAA-GCCACACGATTCATCGAGTTATCATGAATCACCACAACCAG--GCGGA 62321 Query 291 G--GGCGTTGGTTTTTTATCT---AATAAATACACCCCTTC--CGAAGTCGGGGTTTTTA 343 | ||||||||| | ||||| || ||||||| |||||| |||||| ||| ||| Sbjct 62322 GCCTGCGTTGGTTCTGTATCTAAAAAAAAATACAACCCTTCTGCGAAGTTGGGTTTTGGT 62381 Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCC 377 |||||||||||||||||||||||||| ||||||| Sbjct 62382 GCATGTATTAGCTCTAGAATTACCACAGTTATCC 62415 >seq119 Length=1050411 Score = 221 bits (244), Expect = 4e-55 Identities = 162/184 (88%), Gaps = 7/184 (4%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACCCAAAAGA-GCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||||||| | || ||||||||| ||||| |||||||||||| Sbjct 703428 TACTCATTCCAATTACAAGAC---ATGGATGCCCTGTATAGTTATTTCTTGTCACTACCT 703372 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 703371 CCCTGTGTCAGGATTGGATAATTTGCGCGCCTGCTGCCTTCCTT-GATGTGGTAGCCGTT 703313 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT--TGATACCATGG 178 ||||||||||||||||||||||| ||||||||||| |||||||| || || ||||||| Sbjct 703312 TCTCAGGCTCCCTCTCCGGAATCAAACCCTAATTCTCCGTTACCAGTCAAGAGACCATGG 703253 Query 179 TAGG 182 ||| Sbjct 703252 GAGG 703249 >seq555 Length=482893 Score = 154 bits (170), Expect = 4e-35 Identities = 104/115 (90%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 390 ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGC 449 || |||||||||| ||||||| ||||||||||||||||||||||| | || || | || Sbjct 465768 ACCATCAAATAAATTATAACTGCTTTAATGAGCCATTCGCAGTTTCGCCGTGTAAAA-GC 465710 Query 450 TTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 465709 TTATACTGAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 465655 >seq632 Length=425157 Score = 136 bits (150), Expect = 1e-29 Identities = 98/111 (88%), Gaps = 4/111 (4%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACCCAAAAGA-GCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||||||| | || ||||||||| ||||| |||||||||||| Sbjct 107517 TACTCATTCCAATTACAAGAC---ATGGATGCCCTGTATTGTTATTTCTTGTCACTACCT 107461 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTG 111 ||| ||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 107460 CCCTGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTG 107410 >seq143 Length=990835 Score = 136 bits (150), Expect = 1e-29 Identities = 125/156 (80%), Gaps = 8/156 (5%) Strand=Plus/Plus Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAA------ATAAACGATAA 408 |||||||| |||||| ||||||||||||| | | || ||||| || | |||| Sbjct 693714 CTCTAGAACTACCACAGTTATCCATGTAGCAGTG-ACCATCAATACATTATTTATTATAA 693772 Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 || | ||||||||||||||||||||| | || || | ||||||||| || |||||||| Sbjct 693773 GTGCTGTAATGAGCCATTCGCAGTTTCGCCGTGTAAAA-GCTTATACTGAGCCATGCATG 693831 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||| ||||||||||||||||||| | ||||| Sbjct 693832 GCTTAATCCTTGAGACAAGCATATGACTGCCGGCAG 693867 >seq2389 Length=15735 Score = 104 bits (114), Expect = 7e-20 Identities = 137/191 (72%), Gaps = 18/191 (9%) Strand=Plus/Minus Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTC--CGAAGTCGGGGTTTTTAGCATGTA 350 ||||||||| | | || ||||||| || |||||| || ||| || ||| || |||| Sbjct 1455 GCGTTGGTTCTGTGTCCAATAAATGCAACCCTTCTGCGCAGTTTGGTTTTGGTGCCTGTA 1396 Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGTA---------------AGGTACTATC 395 ||||||||||||| ||||| ||||||||||||| | || || ||| Sbjct 1395 TTAGCTCTAGAATGACCACAGTTATCCATGTAGCAGTGGGCAGCGACAGCAGCGACCATC 1336 Query 396 AAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATAC 455 ||||||| | ||||| |||||||||||||||| |||| | || | | ||||| || Sbjct 1335 AAATAAATTACAACTGCGATAATGAGCCATTCGCACTTTCGCCGTGT-CAAAGCTTACAC 1277 Query 456 TTAGACATGCA 466 ||||||||| Sbjct 1276 GGAGACATGCA 1266 >seq223 Length=825179 Score = 100 bits (110), Expect = 9e-19 Identities = 80/94 (85%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 68 TCGGGATTGGGTAATTTGCGCGCC-TGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 || ||||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| Sbjct 398759 TCAGGATTGGGTCATTTGCACGCCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCTCAG 398700 Query 127 GCTCCCTCTCCGGAAT-CGAACCCTAATTCCCCG 159 |||||| |||| | | | | ||||||| | ||| Sbjct 398699 GCTCCCACTCCCGCTTGCAAGCCCTAATCCTCCG 398666 >seq1119 Length=241322 Score = 96.9 bits (106), Expect = 1e-17 Identities = 78/93 (84%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 ||||||||||||| |||||||||| || ||||||||||||| || || | |||||||| Sbjct 116369 AGCATGTATTAGCGCTAGAATTACTACAGTTATCCATGTAG-CAGTGACCACCAAATAAA 116311 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTC 435 | ||||| | |||||||||||||||| |||| Sbjct 116310 TTACAACTGGTATAATGAGCCATTCGCACTTTC 116278 Score = 84.2 bits (92), Expect = 7e-14 Identities = 78/97 (80%), Gaps = 3/97 (3%) Strand=Plus/Minus Query 345 CATGTATTAGCTCTAGAA-TTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 ||||| |||||| ||| | |||||| ||||||||||||| | || |||||||||| Sbjct 116190 CATGTGTTAGCTGTAGGACTTACCAGAGTTATCCATGTAGCAGTGTC--ATCAAATAAAT 116133 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT 440 | ||||| | |||||||||||||||| |||| |||| Sbjct 116132 TACAACTGGTGTAATGAGCCATTCGCACTTTCGCTGT 116096 >seq1266 Length=187150 Score = 91.5 bits (100), Expect = 4e-16 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 31 GCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGC 90 ||||||||| || || ||||||| ||||||| ||||| ||||| ||||| |||||||| Sbjct 28952 GCCCTGTATGGTTACTTCTTGTCACCACCTCCCTGTGTCAGGATTAGGTAAATTGCGCGC 29011 Query 91 CTGCTGCCTTCCTTGGATGT 110 |||||||||||| | ||||| Sbjct 29012 CTGCTGCCTTCCGTAGATGT 29031 Score = 87.8 bits (96), Expect = 5e-15 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 40 CAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCT 99 || ||||| |||||||||||||| ||||| || ||||||| |||||||| ||||||||| Sbjct 29665 CAATATTTCTTGTCACTACCTCCTTGTGTCAGGTTTGGGTAGTTTGCGCGGCTGCTGCCT 29606 Query 100 TCCTTGGATGT 110 ||||| ||||| Sbjct 29605 TCCTTAGATGT 29595 >seq623 Length=432602 Score = 89.7 bits (98), Expect = 2e-15 Identities = 78/95 (82%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 307 TCTAATAAATACACCCCTTC--CGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATT 364 ||||||||||||| | |||| |||||| ||| ||| |||||| ||||||||||||| Sbjct 361018 TCTAATAAATACAACACTTCTGCGAAGTTGGGTTTTGGTGCATGTCTTAGCTCTAGAATG 360959 Query 365 ACCACGGTTATCCATGTAGTAAGGTACTATCAAAT 399 || || ||||||||||||| || |||||||||| Sbjct 360958 ACTACAGTTATCCATGTAG-CAGTGACTATCAAAT 360925 Score = 86.0 bits (94), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 5/110 (5%) Strand=Plus/Minus Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTC--CGAAGTCGGGGTTTTTAGCATGTA 350 ||||||||| | | || ||||||| || |||||| |||||| || ||| |||||| Sbjct 360891 GCGTTGGTTCTCTGTCCAATAAATGCAACCCTTCTGCGAAGTTTGGTTTTGGTGCATGTC 360832 Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT-ACTATCAAAT 399 |||||||||||| ||||| ||||||||||||| ||| || ||||||| Sbjct 360831 TTAGCTCTAGAAAGACCACAGTTATCCATGTAG--CGGTGACCATCAAAT 360784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510253672448