Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1090 187 2e-42 seq22 187 2e-42 seq837 161 8e-35 seq323 154 1e-32 seq1075 129 5e-25 seq278 122 7e-23 >seq1090 Length=248447 Score = 187 bits (206), Expect = 2e-42 Identities = 363/532 (68%), Gaps = 7/532 (1%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| ||| || ||||| |||||||||| ||||||| |||| || | | ||| Sbjct 61933 ATGTACAAGAAGCATGAGGCTTCTTTCTGGACGGCGGAGGAGATCGACCTGGCGCAGGAC 61992 Query 61156 ATGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 | || ||||||| | || | | ||| || || || || ||| | || || || ||||| Sbjct 61993 AACAAGGACTGGGTGACGATGAACGAA-GGCGAGCAGCACTTCGTGAAGCACGTCTTGGC 62051 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 |||||||| || || || || ||||| ||||| | | | ||| | ||| Sbjct 62052 CTTCTTTGCTGCATCTGAAGGAATCGTACTAGAGAACCTCGCCGCGCAGTTCTCCACGGA 62111 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 |||||| | | ||||| | ||||||||||||||||| ||||||||||| |||| Sbjct 62112 GGTGCAGATTCCTGAGGCCAGGGCATTCTACGGCTTCCAGATCGCCATGGAGAACATCCA 62171 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 || |||| |||| | || || || |||||||| ||| | ||||| || | Sbjct 62172 TTCCGAGACGTACTCGCTCCTGATTGAGCAGTACATCAAGGACCCTGCGGAGAAAGACAG 62231 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 | ||| |||||||| | || || ||||| || ||| ||| || |||| | | Sbjct 62232 CCTTTTCGATGCCATCCACACCATGCCGGCAGTTCAGCAGAAGGCTCTGTGGGTTGTGCA 62291 Query 61455 TTGGATCACCAGT-ACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 ||||| | | || | | | ||| || || || ||| |||| ||||| | || | Sbjct 62292 GTGGATGAACCGTGAGAGCAGCTTCACC----GAGCGCTTGGTGGCTTTTGCTGCCGTGG 62347 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 |||| | | || || || || || ||| |||| ||| ||||||| || || || | Sbjct 62348 AGGGCATCCTCTTTAGCGGCTCCTTCTGCGCCCTCTTCTGGCTGAAGAAGCGCGGCCTGA 62407 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCA 61625 |||| || ||||||||| ||| ||| | || || |||||||||||| |||| Sbjct 62408 TGCCGGGCCTGACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCA 62459 >seq22 Length=1799166 Score = 187 bits (206), Expect = 2e-42 Identities = 360/527 (68%), Gaps = 7/527 (1%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| ||| || ||||| |||||||| | ||||||| |||| || | | ||| Sbjct 596617 ATGTACAAGAAGCATGAGGCTTCATTCTGGACAGCGGAGGAGATCGACCTGGCGCAGGAC 596558 Query 61156 ATGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 | || ||||||| | || | | ||| || || || || ||| | || || || ||||| Sbjct 596557 AACAAGGACTGGGTGACGATGAACGAA-GGCGAGCAGCACTTCGTGAAGCACGTCTTGGC 596499 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 |||||||| ||||| || || ||||| ||||| | | | ||| | ||| Sbjct 596498 CTTCTTTGCTGCTTCTGATGGAATCGTGCTGGAGAACCTCGCCGCGCAGTTCTCCACGGA 596439 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 |||||| | | ||||| | ||||||||||||||||| ||||||||||| |||| Sbjct 596438 GGTGCAGATTCCTGAGGCCAGGGCATTCTACGGCTTCCAGATCGCCATGGAGAACATCCA 596379 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 || |||| |||| | || || || |||||||| ||| | ||||| || | Sbjct 596378 TTCCGAGACGTACTCGCTCCTGATTGAGCAGTACATCAAGGACCCTGCGGAGAAAGACAG 596319 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 | ||| |||||||| | || || ||||| || ||| ||| || ||||| | | Sbjct 596318 CCTTTTCGATGCCATCCACACCATGCCGGCCGTTCAGCAGAAGGCTCTGTGGGCTGTGCA 596259 Query 61455 TTGGATCACCAGT-ACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCG 61513 ||||| | | || | | | ||| || || || ||| |||| ||||| | || | Sbjct 596258 GTGGATGAACCGTGAGAGCAGCTTCA----CCGAGCGCTTGGTGGCTTTTGCTGCCGTGG 596203 Query 61514 AGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 |||| | | || || || || || ||| |||| ||| ||||||| || || || | Sbjct 596202 AGGGCATCCTCTTTAGCGGCTCCTTCTGCGCCCTCTTCTGGCTGAAGAAGCGCGGCCTGA 596143 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620 |||| || ||||||||| ||| ||| | || || |||||||||||| Sbjct 596142 TGCCGGGCCTGACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGC 596096 Score = 181 bits (200), Expect = 8e-41 Identities = 361/528 (68%), Gaps = 9/528 (2%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| ||| || ||||| |||||||| | ||||||| |||| || | | ||| Sbjct 589115 ATGTACAAGAAGCATGAGGCTTCATTCTGGACAGCGGAGGAGATCGACCTGGCGCAGGAC 589056 Query 61156 ATGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 | || ||||||| | || | | ||| || || || || ||| | || || || ||||| Sbjct 589055 AACAAGGACTGGGTGACGATGAACGAA-GGCGAGCAGCACTTCGTGAAGCACGTCTTGGC 588997 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 |||||||| || || ||||| ||||| ||||| | | | ||| | ||| Sbjct 588996 CTTCTTTGCTGCATCTGACGGAATCGTGCTGGAGAACCTCGCCGCGCAGTTCTCCACGGA 588937 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 |||||| | | ||||| | ||||||||||||||||| ||||||||||| |||| Sbjct 588936 GGTGCAGATTCCTGAGGCCAGGGCATTCTACGGCTTCCAGATCGCCATGGAGAACATCCA 588877 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGA-ACGTGAAC 61393 || |||| |||| | || || || |||||||| ||| | || || | | | Sbjct 588876 TTCCGAGACGTACTCGCTCCTGATTGAGCAGTACATCAAGGACCCTGCAGAGAAAAGCAG 588817 Query 61394 GATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCA 61453 || ||| |||||||| | || || ||||| || ||| ||| || ||||| | Sbjct 588816 CCTT-TTCGATGCCATCCACACCATGCCGGCCGTTCAGCAGAAGGCTCTGTGGGCTGTGC 588758 Query 61454 ATTGGATCACCAGT-ACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 | ||||| | | || | | | ||| || || || ||| |||| ||||| | || Sbjct 588757 AGTGGATGAACCGTGAGAGCAGCTTCACC----GAGCGCTTGGTGGCTTTTGCTGCCGTG 588702 Query 61513 GAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTT 61572 ||||| | | ||||| || || || ||| |||| ||| ||||||| || || || Sbjct 588701 GAGGGCATCCTCTTCAGCGGCTCCTTCTGCGCCCTCTTCTGGCTGAAGAAGCGCGGCCTG 588642 Query 61573 ATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620 ||||| || ||||| ||| ||| ||| |||| || |||||||||||| Sbjct 588641 ATGCCGGGCCTGACATTCTCCAACGAGCTGATCTCCCGCGACGAGGGC 588594 >seq837 Length=329666 Score = 161 bits (178), Expect = 8e-35 Identities = 388/576 (67%), Gaps = 26/576 (5%) Strand=Plus/Minus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || || |||||||| || || | ||| || || || ||||| | |||||| || || Sbjct 86494 GAGGCCAGGTTGCACACTGCCACCTCATCCTTCGCAGTGTACTCAATAATTTCTGTACAA 86435 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATT-GCATGCATC 66132 || || |||| | || ||||| | |||||| || || |||||| || || || || Sbjct 86434 AGGTTGGAGCAGTGGATTGTGCCGAGATTCTGCTGGTTGGACTTGCGGTTCGCGTGG-TC 86376 Query 66133 CTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG 66192 |||||||| |||||| || ||||| ||||| | || ||||| | ||| | |||||| Sbjct 86375 CTTGTACAGCATGTAAGGCGTGCCCGTCTCCATCTGCGACTCGAGAATGCGGAACCAAAG 86316 Query 66193 AGCGCGTGCCTT---CACCGTACGTACC--GCCCTACCTTT----GCGTTCGTAATGTTC 66243 ||||||| |||| | ||| || ||||| ||| | ||| ||| | | Sbjct 86315 CTGCTGTGCCTTGACCACCTTCCGTCCCTTGCCCTCCCTCTCCAGGCGCGTGTACAGCGC 86256 Query 66244 GTAGAGGTGTTCG----AAGGATTCA----CCCCATACTTCG-GACA-GACATGGACACT 66293 | || | ||| | | || || |||| ||| | | | | | | | | || Sbjct 86255 CTCGAACTCCTCGCCCCATGCATCCATTAGCCCCTTACCACTTGTCTCGTCGTAGGC-CT 86197 Query 66294 TGTGTGGACACATCAGCGACCAATCACCATCCTGTTCT--ACACGACGCATAAATAGATC 66351 || ||| || | || | |||||| || ||| || || ||| ||| || ||||| Sbjct 86196 CGTTTGGGCAAAAGAGAGTCCAATC--CAAGTTGTCCTTGACCCGAGTCATGAAGAGATC 86139 Query 66352 AGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTT 66411 || |||||||| | ||||||||||| || || || |||||||| |||||||||| || Sbjct 86138 CGGAATCCAGAGCCCATAGAAGAGATCCCGGGCGCGCTGCTCCTCCTTGCCGTGATTCTT 86079 Query 66412 GCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGA 66471 | || || | || || |||| || || ||||| || |||||||| || ||||| || Sbjct 86078 CCTCAGCTCCAACAAGTCGAAGACATCTGCGTGCCAAGGCTCCAGGTACATCGCGAAAGA 86019 Query 66472 GCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAA 66531 |||| | | || || ||||| || |||||||| || || | ||||||| || | Sbjct 86018 GCCCTTCCTCTTTCCTCCACCCTGATCGACGTACCGCGCCGTCTCGTTGAAGTTCCGGAG 85959 Query 66532 CATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 ||| || ||||| || || | |||||||||||| Sbjct 85958 CATGGGCACGAGGCCATTGCTGTGGCCATTGGTGCC 85923 Score = 102 bits (112), Expect = 6e-17 Identities = 162/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||| ||| |||| |||||| ||||| || | ||||||||| | ||| || Sbjct 87410 ATCCACGGTGAACTTGATAGCATCAGCAGCTGCCTTCGTTCGAAGATAGTAAAGGCCTGT 87351 Query 65137 CTTGAGGCC-AGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCT 65195 ||| | ||| ||| |||| | | ||| ||||| ||||| | || ||| || | Sbjct 87350 CTTCAAGCCTAGCT-GCCAGCCGTGGAAGTGCATGGATGACAGCTTGGCAGTGGTCACAT 87292 Query 65196 CGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCA 65255 | | || || || |||| |||||| ||||||||||||| || ||||| | |||| Sbjct 87291 CCGTCATGTGAATGTTCAGCGACTGCGACTGATCGATGTAAACGCCTCGATCACCGGCCA 87232 Query 65256 TGTCAATGATACGACGTCC--CGATATCTCCCAGACGGTCTTGTACAG 65301 |||| | | || || | | | || ||||| || ||||||||||| Sbjct 87231 TGTCTAGG--ACAACCTTCTGCCTGATTTCCCAAACAGTCTTGTACAG 87186 >seq323 Length=666680 Score = 154 bits (170), Expect = 1e-32 Identities = 310/458 (68%), Gaps = 4/458 (1%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || |||||||| |||||||||||||||| || || |||||||| | Sbjct 306421 CATGAAGAGATCCGGGATCCAGAGCCCGTAGAAGAGATCGCGGGCACGCTGCTCCTCCTT 306480 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 |||||| || ||||| | || ||||| ||||| | | |||||||| || |||||||| Sbjct 306481 GCCGTGGTTCTTGCGAAGCTCCAGGAAGTCAAAAACATTCGCATGCCAGGGCTCCAGGTA 306540 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTT 66519 || ||||| |||||| | | |||||||| || || || || || | || | ||| Sbjct 306541 CATAGCGAATGAGCCCTTCCTCTTGCCGCCGCCCTGATCCACATACCTCGCCGTCTCGTT 306600 Query 66520 GAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGA 66579 ||| ||| | ||| ||||||| || || | ||| || |||||| ||| ||| Sbjct 306601 GAAATTACGGAGCATGGGTACGATGCCATTGCTGTGGCCGTTCGTGCCGCGAATGTAGGA 306660 Query 66580 TCCTCGTGCCCGTATATCGTGAACATT--CAGACCAATACCACCGGCCGTCTTCGAGATG 66637 || | || || | | | | ||| || ||||| |||||||| | ||| |||||| Sbjct 306661 GCCGCTGGCACGCACGT--TCGAGATTGCCACGCCAATTCCACCGGCAGACTTGGAGATG 306718 Query 66638 GCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGG 66697 | ||| || | || || | || || |||||| |||| ||| | |||| Sbjct 306719 GAAGCGCACTGCTTCAGGGTGTCATAGATACCCTCAATGCTGTCATCCTGCAACTTCAGC 306778 Query 66698 AGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCG 66757 ||| |||| || | || || || || || | || |||||| || || || || Sbjct 306779 AGGAAGCAGGAGGACATCTGTGGCTTCGGAGTCCCAGCATTGAAGAGAGTCGGCGTCGCA 306838 Query 66758 TGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTC 66795 || || ||| | | || ||||| | | |||||||| Sbjct 306839 TGGGTGAAGAACTTCCGCGACATCAAGTCATACGTCTC 306876 >seq1075 Length=250942 Score = 129 bits (142), Expect = 5e-25 Identities = 293/439 (67%), Gaps = 5/439 (1%) Strand=Plus/Plus Query 61183 GGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242 ||||| || || ||| | || || || |||| |||||||| || || ||||| ||||| Sbjct 198761 GGTGAGCAGCACTTCGTGAAGCACGTCCTGGCCTTCTTTGCGGCATCCGACGGCATCGTG 198820 Query 61243 AATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 ||||| | | | ||| || |||||||| | | ||||| || ||| Sbjct 198821 CTCGAGAACCTCGCAGCGCACTTCTCGACAGAGGTGCAGATCCCAGAGGCTCGGGCCTTC 198880 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 || ||||||||||| ||||||||||| |||| || |||| ||| | | | || | Sbjct 198881 TATGGCTTCCAGATAGCCATGGAGAACATCCATTCCGAGACATACTCTCTGTTGATTCAG 198940 Query 61363 ACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG 61422 |||||||| ||| | | || || || | ||| | ||||| | || || ||| Sbjct 198941 CAGTACATCAAGGACCCTGTAGAGAAGGATCGCCTTTTCGACTCCATCCACACCATGCCG 199000 Query 61423 GCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGT-ACAACGGCTACATT 61481 || ||| ||| ||| || |||||| | | ||||| | || | | | ||| || Sbjct 199001 GCTGTGCAGCAGAAGGCTCTGTGGGCCGTGCAGTGGATGAATCGTGAGAGCAGCTTCA-- 199058 Query 61482 TGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGC 61541 ||| || ||| |||| ||||| | || ||||| | | ||||| || | || Sbjct 199059 --CTGAGCGCTTGGTGGCTTTTGCCGCTGTGGAGGGCATCCTCTTCAGCGGCTGCTTCTG 199116 Query 61542 CGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTT 61601 ||| |||| ||| ||||||| || || || ||||| || ||||||||| ||| ||| | Sbjct 199117 CGCCCTCTTCTGGCTGAAGAAGCGCGGCCTGATGCCGGGCCTGACCTTCTCCAACGAGCT 199176 Query 61602 GATATCACGCGACGAGGGC 61620 || || ||||| |||||| Sbjct 199177 CATCTCCCGCGATGAGGGC 199195 >seq278 Length=723494 Score = 122 bits (134), Expect = 7e-23 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || |||||||| | |||||||||||||| || || |||||||| | Sbjct 224168 CATGAAGAGATCCGGGATCCAGAGCCCATAGAAGAGATCGCGGGCACGCTGCTCCTCCTT 224227 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 |||||| || ||||| | || ||||| || | | ||| |||||||| || |||||||| Sbjct 224228 GCCGTGGTTCTTGCGAAGCTCCAGGAAATCGAGCACGTCCGCATGCCAGGGCTCCAGGTA 224287 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTA 66504 || ||||| |||||| | | ||||| || || || || || || Sbjct 224288 CATAGCGAAGGAGCCCTTCCTCTTGCCTCCGCCCTGATCCACATA 224332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397521058152320