Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiodinium_20microadriaticum_20[genbank_20GCA_5F001939145.1_202017 -01-06] 9,688 sequences; 808,226,712 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq5535 167 1e-36 >seq5535 Length=1768 Score = 167 bits (184), Expect = 1e-36 Identities = 338/484 (70%), Gaps = 27/484 (6%) Strand=Plus/Plus Query 35565 GGCAACGTTGCACGTCTGGTTGATCATCTGAGGCACTAATGAACCAACAATTATTTCAAA 35624 || ||||| || |||||||||||| |||||||||||||||||||| | |||||||| Sbjct 695 GGAAACGTAGCGCGTCTGGTTGATGCACTGAGGCACTAATGAACCAATCACAATTTCAAA 754 Query 35625 AGGCGGCTGGTATTAGCGCCGGGCAGGCTGCGCGCTGGTTTCCGCACATTGA-TGCGGCG 35683 |||||||||| | ||||||| | |||||||||||||||| || || | | || || Sbjct 755 AGGCGGCTGGGCTAAGCGCCGAGTTAGCTGCGCGCTGGTTTCAGC-CAGTCAGTGACGCA 813 Query 35684 ATGAAGGAATTCGGCATTACAGCACCAGCGGATCAGGCGATGTTTATCGCTCAGGTAGGC 35743 ||||| || |||||||| || || | || ||||||||||| |||||||||| ||| Sbjct 814 ATGAAAGAGTTCGGCATCACCAAGCCGGTAGACCAGGCGATGTTCATCGCTCAGGCAGGG 873 Query 35744 CATGAGTCGATGGGGTTTAGCGCCG-TAGTTGAAAATTTTAACTACACGCCAT-CTGCGC 35801 ||||| || | || || | | | | || |||| || ||||| ||| | ||| | Sbjct 874 CATGAATC-AGCTGGCTTCACTCTGCTCGTGGAAAGCTTCAACTA-TCGCATTGCTGGAC 931 Query 35802 TGG-TGGCGACGTTCG-GAAAGAGGATCACACAGCAG--CAGGCTGATGCCCTTGG---- 35853 ||| | | | | || | || | | ||| |||| |||||| | || ||||| Sbjct 932 TGGTTAACTTCATCCGTGCTGGACG-CCTCACTGCAGACCAGGCTAACGCGCTTGGGCGT 990 Query 35854 ----CAGAACATCCGGACA-TGCAGCT----CGTCAGGATGCTATTGCCAATCTGGTGTA 35904 | ||| | || ||| | | | | || ||| || ||||| || ||||| || Sbjct 991 CGTCCTGAAGA-GCGAACATTACCGATTGAGCGCCAGCGCGCCATTGCGAACCTGGTATA 1049 Query 35905 TAGCAACCGGCTGGGTAACAAAGCACCCGGTGATGGCTGGAAATATCGTGGTAGAGGATT 35964 ||||| || |||| ||||| ||||||||||| |||||| || ||||| | || | Sbjct 1050 CAGCAAACGCATGGGGAACAACGCACCCGGTGACGGCTGGTTTTACCGTGGGCGTGGGCT 1109 Query 35965 AATTCAAATCACTGGCCTCCATAATTATCGCATCTGT-GGCGCGGCGCTGAAGTTAGATC 36023 || || || || |||||| |||| || || ||| || |||| |||||| | |||| Sbjct 1110 TATCCAGATTACCGGCCTCAATAACTACCGTGATTGTGGGAACGGC-CTGAAGGTTGATC 1168 Query 36024 TGGT 36027 |||| Sbjct 1169 TGGT 1172 Score = 167 bits (184), Expect = 1e-36 Identities = 338/484 (70%), Gaps = 27/484 (6%) Strand=Plus/Plus Query 75028 GGCAACGTTGCACGTCTGGTTGATCATCTGAGGCACTAATGAACCAACAATTATTTCAAA 75087 || ||||| || |||||||||||| |||||||||||||||||||| | |||||||| Sbjct 695 GGAAACGTAGCGCGTCTGGTTGATGCACTGAGGCACTAATGAACCAATCACAATTTCAAA 754 Query 75088 AGGCGGCTGGTATTAGCGCCGGGCAGGCTGCGCGCTGGTTTCCGCACATTGA-TGCGGCG 75146 |||||||||| | ||||||| | |||||||||||||||| || || | | || || Sbjct 755 AGGCGGCTGGGCTAAGCGCCGAGTTAGCTGCGCGCTGGTTTCAGC-CAGTCAGTGACGCA 813 Query 75147 ATGAAGGAATTCGGCATTACAGCACCAGCGGATCAGGCGATGTTTATCGCTCAGGTAGGC 75206 ||||| || |||||||| || || | || ||||||||||| |||||||||| ||| Sbjct 814 ATGAAAGAGTTCGGCATCACCAAGCCGGTAGACCAGGCGATGTTCATCGCTCAGGCAGGG 873 Query 75207 CATGAGTCGATGGGGTTTAGCGCCG-TAGTTGAAAATTTTAACTACACGCCAT-CTGCGC 75264 ||||| || | || || | | | | || |||| || ||||| ||| | ||| | Sbjct 874 CATGAATC-AGCTGGCTTCACTCTGCTCGTGGAAAGCTTCAACTA-TCGCATTGCTGGAC 931 Query 75265 TGG-TGGCGACGTTCG-GAAAGAGGATCACACAGCAG--CAGGCTGATGCCCTTGG---- 75316 ||| | | | | || | || | | ||| |||| |||||| | || ||||| Sbjct 932 TGGTTAACTTCATCCGTGCTGGACG-CCTCACTGCAGACCAGGCTAACGCGCTTGGGCGT 990 Query 75317 ----CAGAACATCCGGACA-TGCAGCT----CGTCAGGATGCTATTGCCAATCTGGTGTA 75367 | ||| | || ||| | | | | || ||| || ||||| || ||||| || Sbjct 991 CGTCCTGAAGA-GCGAACATTACCGATTGAGCGCCAGCGCGCCATTGCGAACCTGGTATA 1049 Query 75368 TAGCAACCGGCTGGGTAACAAAGCACCCGGTGATGGCTGGAAATATCGTGGTAGAGGATT 75427 ||||| || |||| ||||| ||||||||||| |||||| || ||||| | || | Sbjct 1050 CAGCAAACGCATGGGGAACAACGCACCCGGTGACGGCTGGTTTTACCGTGGGCGTGGGCT 1109 Query 75428 AATTCAAATCACTGGCCTCCATAATTATCGCATCTGT-GGCGCGGCGCTGAAGTTAGATC 75486 || || || || |||||| |||| || || ||| || |||| |||||| | |||| Sbjct 1110 TATCCAGATTACCGGCCTCAATAACTACCGTGATTGTGGGAACGGC-CTGAAGGTTGATC 1168 Query 75487 TGGT 75490 |||| Sbjct 1169 TGGT 1172 Score = 95.1 bits (104), Expect = 6e-15 Identities = 133/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 74366 TTCCCCTCATATCTGAGAGGACCAACAGCAATTAAGAGGGGG-CTAAATGTCCGATCCGA 74424 |||||||||| ||||||||| || ||||| ||||||||| ||| ||||||||||| Sbjct 24 TTCCCCTCATCACTGAGAGGATTCACGGCAAT-AAGAGGGGGACTAGATGTCCGATCCTG 82 Query 74425 TTTCCGGTACTGGGCTGGCTGGTGGTGCCCTGACGGGTGCCAGTGTTTATGGACTGCTGA 74484 |||| || || | || | ||||| |||| ||| ||||| | | || ||| | Sbjct 83 TTTCTGGCACGACAGTAGCGGCTGGTGGTCTGATGGGGGCCAGCATGTTCGGCCTGGCAA 142 Query 74485 CCGGAACTGATTACGGCGTTGTATTTGGCGCATTTGCAGGGGCTGTATTCTACATAGCAA 74544 | || | |||||||| || || ||||| ||||| || || || || |||||| | || | Sbjct 143 CTGGCATAGATTACGGTGTGGTGTTTGGTGCATTCGCCGGTGCGGTGTTCTACGTCGCTA 202 Query 74545 CAGC 74548 | || Sbjct 203 CGGC 206 Score = 87.8 bits (96), Expect = 9e-13 Identities = 132/184 (72%), Gaps = 3/184 (2%) Strand=Plus/Plus Query 34904 TTCCCCTCATATCTGAGAGGACCAACAGCAATTAAGAGGGGG-CTAAATGTCCGATCCGA 34962 |||||||||| ||||||||| || ||||| ||||||||| ||| ||||||||||| Sbjct 24 TTCCCCTCATCACTGAGAGGATTCACGGCAAT-AAGAGGGGGACTAGATGTCCGATCCTG 82 Query 34963 TTTCCGGTACTGGGCTGGCTGGTGGTGCCCTGACGGGTGCCAGTGT-TTATGGATGCTGA 35021 |||| || || | || | ||||| |||| ||| ||||| | || | || | Sbjct 83 TTTCTGGCACGACAGTAGCGGCTGGTGGTCTGATGGGGGCCAGCATGTTCGGCCTGGCAA 142 Query 35022 CCGGAACTGATTACGGCGTTGTATTTGGCGCATTTGCAGGGGCTGTATTCTACATAGCAA 35081 | || | |||||||| || || ||||| ||||| || || || || |||||| | || | Sbjct 143 CTGGCATAGATTACGGTGTGGTGTTTGGTGCATTCGCCGGTGCGGTGTTCTACGTCGCTA 202 Query 35082 CAGC 35085 | || Sbjct 203 CGGC 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247445979984448