Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq17561 259 2e-66 >seq17561 Length=7580 Score = 259 bits (286), Expect = 2e-66 Identities = 238/295 (81%), Gaps = 11/295 (4%) Strand=Plus/Minus Query 393 AATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTG 452 ||||||| | | | ||||||||| |||||||||||||||||||| ||| ||||| |||| Sbjct 2911 AATGGTTTTTACCCACCCGTCTTGAAACACGGACCAAGGAGTCTATCATATATGCAAGTG 2852 Query 453 TTTGGGTGTCAAACCCGTG-CGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT 511 | ||| ||| | ||||||||||| |||| | || || | | | Sbjct 2851 TGCTAGTGGAAAAACTAACACGCGTAATGAAGGTGATTGA---TGCCAAGCGC--AAGCA 2797 Query 512 GCACCATCGACCGATCCTGATGTCTTCGGATGGA---TTTGAGTAAGAGCATAGCTGTTG 568 ||| |||||||||| | |||| ||| | |||| | |||||||||||||||| || | Sbjct 2796 GCAGCATCGACCGACCATGAT-TCT-CTGATGAAAGGTTTGAGTAAGAGCATATATGCTA 2739 Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 2738 GGACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCCAGGGGAAACTCTGGTGGA 2679 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| |||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 2678 GGCTCGTAGCGGTTCTGACGTGCAAATCGATCGTCAAACTTGGGTATAGGGGCGA 2624 Score = 154 bits (170), Expect = 6e-35 Identities = 133/164 (81%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||||| |||||| ||||||| | | |||||| |||| |||||| |||| ||||||||| | Sbjct 3305 TTCGAAGAGTCGGGTTGTTTTGTATTGCAGCCCTAAGTGGGAGATAAACTTCTTCTAAGG 3246 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||||| || |||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 3245 CTAAATATTAATGGGAAACCGATAGCGAACAAGTACTGTGAAGGAAAGATGAAAAGAACT 3186 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 ||| ||||||||| |||| || |||||| ||||| | ||||| Sbjct 3185 TTGAAAAGAGAGTCAAAA--GACTTGAAATCGTTGAGAAGGAAG 3144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079459052450