Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq24649 122 2e-23 >seq24649 Length=1633 Score = 122 bits (134), Expect = 2e-23 Identities = 345/529 (65%), Gaps = 6/529 (1%) Strand=Plus/Minus Query 37772 GGATTTCCGCTCGTGACAACGAAAAAATTGCATATCCGCTCCATCATTTATGAACTGCTT 37831 || || ||| | ||||| || |||||| | ||| | ||||| || ||| ||||||| | Sbjct 1612 GGCTTCCCGTTGGTGACCACAAAAAAACTACATTTGCGCTCTATTATTCATGAACTTATC 1553 Query 37832 TGGTTTTTAAAAGGCGATACGAACGTCCGCTATTTGCAGGAGAATGGCGTGACGATTTGG 37891 ||||||||| || || || || ||||| | || |||||||| |||||||| Sbjct 1552 TGGTTTTTAGCTGGATCAACCAATATCGCTTATTTAAAAGAAAATGGCGTATCGATTTGG 1493 Query 37892 GATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATTTACGGCGCGCAATGGCGCTCG 37951 ||||| ||||| || ||||| || ||| | || || | || || | || ||||| Sbjct 1492 GATGATTGGGCTGATGAAAATGGTGATTTAGGTCCAGTCTATGGGTCTCAGTGGCGTAGT 1433 Query 37952 TGGAAGGGAGCAGACGGGAAAACCATCGACCAGATCGCATGGGTTGTCGAAGAGATCAAA 38011 ||| || | || |||| || || || | | | | | || ||| Sbjct 1432 TGGCCATTGCCAAATGGCGGTCATGTCGATCAAATTACACAACTGATTGCACAAATTAAA 1373 Query 38012 CGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTGGAATGTAGCAGAATTGGACGAG 38071 || || | || | || ||| | ||| ||||||||||| |||||| | | Sbjct 1372 TCGAACCCAGACTCTAGACGCCTGATCGTGTCTGCTTGGAATGTGGCAGAAATTCCAAAT 1313 Query 38072 ATGAAGCTGCCGCCGTGTCATTACGCCTTT---CAGTTCTATGTCGCCAACGGCCGGTTG 38128 ||||||||||| || || ||| || ||| ||||| ||||| ||| | ||| | || Sbjct 1312 ATGAAGCTGCCCCCCTGCCAT---GCATTTTTCCAGTTTTATGTTGCCGATGGCAAGCTG 1256 Query 38129 TCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTTAGGGTTGCCGTTTAACATCGCG 38188 |||||| | | || ||| | |||| ||| | ||| | || || || ||||| Sbjct 1255 TCATGCCAGCTATATCAACGCAGTGCAGATATTTTTCTTGGGGTTCCATTCAATATCGCA 1196 Query 38189 AGCTACGCGCTGTTGACGCATATGGTAGCCCAACAATGCGACTTGGATGTCGGTGAACTC 38248 ||| || | ||||| |||||||| || |||||| || || | || || || | Sbjct 1195 TCCTATGCTTTATTGACACATATGGTTGCACAACAAACTGATCTGCAAGTTGGGGACTTT 1136 Query 38249 ATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAG 38297 |||| || || |||||| ||||| |||| ||||| ||||||||| Sbjct 1135 ATTTGGACTGGTGGCGACTGTCATTTATACAGCAATCACATGGAACAAG 1087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130600876504350