Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2561 212 5e-50 seq8878 154 1e-32 seq12789 104 2e-17 >seq2561 Length=3495 Score = 212 bits (234), Expect = 5e-50 Identities = 508/763 (67%), Gaps = 4/763 (1%) Strand=Plus/Plus Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 || |||| ||| || || ||||| |||||||| || |||||| || |||| || || Sbjct 1629 AGAGCAATAGAGGCAAGATTGCACACAGCTATTTCATCAGGACTTGTGAACTCTACGATC 1688 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 || ||||| ||||| || ||||| || | || | | || ||| | |||| Sbjct 1689 TCAGTGCAAAGATTCGAGCTCTTAATGGTTCCTAGGTTTTACTAGTTGGACTTTCTATTG 1748 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 || ||||| ||||| | |||||| ||||| || ||||||| ||| ||||| | || Sbjct 1749 CAAGCATCTTTGTAGAGCATGTAAGGAGTTCCAGTCTCAATTTGAGACTCTACTATCTGT 1808 Query 66185 TGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTAATGTTC 66243 |||||| || ||||| | || | | | || | || ||||||| || | || Sbjct 1809 CCCCAAAGCCATCGGGCCTTAATAGT-CTTGCGACCGCGTCCAGTGCGTTCATACTCCTC 1867 Query 66244 GTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACA 66303 |||||| | ||| || ||| ||||| || || | ||| |||| || ||||| Sbjct 1868 GTAGAGCTTTTCAAATTCTTCTCCCCAAGTGGTGGTGAGGCCTGGGCACTCGTTGGGACA 1927 Query 66304 CATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAG 66363 ||| || | ||| || | | || || || | ||||| || | ||||| |||||||| Sbjct 1928 CATGAGAGTCCAGTCTTCGTTGTGCTCAACTCTTCGCATGAACAAGTCAGGAATCCAGAG 1987 Query 66364 GGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAG 66423 |||||||| | || || |||| | ||| || | ||||| ||||| |||| | ||| Sbjct 1988 AGCGTAGAACAAGTCACGAGCTCTATTCTCTTCCTTACCGTGGTTTTTACGCAGCTGGAG 2047 Query 66424 GAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTT 66483 ||| ||| ||||||| |||||||| || | |||| |||||| | || | | ||| Sbjct 2048 GAAGTCATAGATGTCACTGTGCCATGGCTCTACATAGACGGCGAAAGCACCTTTTCTTTT 2107 Query 66484 GCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAG 66543 ||||||||| || || ||||| | ||| | |||||||| | ||| || | ||| Sbjct 2108 GCCGCCACCCTGATCTACGTATCTTGCGGTGTCATTGAAGACCTTAAGCATAGGAATGAG 2167 Query 66544 CCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGA-A 66602 ||||| || | ||||| || || ||| ||| | || | ||||| ||| | Sbjct 2168 TCCGTTGGAGTATCCATTTGTACCTCTGATATAGGAGTCAGCAGCTCTGATATC-TGAGA 2226 Query 66603 CATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGA 66662 | | ||| || ||||| || | ||| |||||| ||| | || || || Sbjct 2227 CGGAAACACCGATGCCACCAGCAGCCTTAGAGATGATTGCAATTTGTTTCAGAGTTTCGA 2286 Query 66663 ATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTT 66722 |||| || || |||||||| |||||| ||||| | | |||| ||||| | || || | Sbjct 2287 ATATTCCATCTATGGAGTCCTCCTTGACAGTCAGCAAGAAGCAAGAACTCATCTGAGGCT 2346 Query 66723 TGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAA 66765 |||| || | | ||| || ||||| || ||||| || || Sbjct 2347 TGGGAGTTCCAGAGTTGAAAAGAGTGGGAGTGGCGTGAGTGAA 2389 >seq8878 Length=3384 Score = 154 bits (170), Expect = 1e-32 Identities = 590/914 (65%), Gaps = 12/914 (1%) Strand=Plus/Minus Query 66017 GCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGA 66076 || || ||||| ||||| ||||| |||| || || ||||| | ||||||| || ||| Sbjct 2022 GCAAGATTGCACACAGCAATCTCATCAGCAGAAGTGTACTCCATAATTTCGCAACAGAGA 1963 Query 66077 TTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG-CATGCATCCTT 66135 ||| | || || || | |||| ||||| |||||||||||| | || || || Sbjct 1962 TTAGAACTCTTGATAGTTCCAAGGTTCTTCTGATTGCTCTTGCGATTGGCGTGG-TCTTT 1904 Query 66136 GTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGC 66195 ||| | |||||| ||| | || || |||| ||||| |||||| ||||| | ||| | Sbjct 1903 GTAGAGCATGTAAGGATTTCCAGTTTCAATTTGGGCCTCAATAATGGCCTCCCAGACTTT 1844 Query 66196 GCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCG-TTCGTAATGTTCGTAGAGGTGTT 66254 | ||||||| || | | ||| | |||| ||| || | || |||||| || Sbjct 1843 TTGAGCCTTCATAGTTT-TGCGGCCAAGTCCTTGCTCTTCATACTTTTGGTAGAGAGCTT 1785 Query 66255 CGAAGGATTCACCCCATACTTCGGACAGACA--TGGACACTTGTGTGGACACATCAGCGA 66312 | || || || | || || | |||| ||| | | || ||||| | || | Sbjct 1784 CAAACTCATCGCCATAAACGTCATAAAGACCCTTGGCTTCAT-TG-GGACAGAAAAGAGT 1727 Query 66313 CCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372 ||| || |||| || || || | ||| || | |||||| | ||| || | ||| Sbjct 1726 CCAGTCTCCATTCTCTTGGACTCTCTTCATGAACAAATCAGGAACCCATAGACCCATGAA 1667 Query 66373 GAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAA 66432 | || || ||||||||||| || | || ||||| || | ||| | ||| | ||||| Sbjct 1666 CAAGTCACGAGCTCGTTGCTCTTCTTTACCATGATTCTTTCTCAATTGGAGATAGTCAAA 1607 Query 66433 GATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACC 66492 ||| || || ||||| ||||| || |||||||| || || ||| | | || || || || Sbjct 1606 GATATCAGCGTGCCAGGGTTCAAGATAGATGGCAAAGGAACCCTTTCTCTTTCCACCTCC 1547 Query 66493 TTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552 ||||| || || | || | |||||||| | | ||| || | ||| || || || Sbjct 1546 CTGGTCTACATATCTTGCTGTCTCATTGAAGACTCTGAGCATGGGAAGGAGTCCATTTGA 1487 Query 66553 TTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACC 66612 | |||||||| || | ||| | |||| || | || | |||||| || || Sbjct 1486 GTATCCATTGGTACCCTTTATGTAGCTTCCTGTAGCTCTGATGTTGTGAACTGCAAGTCC 1427 Query 66613 AATACCACCGGCCGTCTTCGAGATGGCAGC-ACAATC-GGCCACTGTCCGGAATATGCCG 66670 | ||||| || |||| || ||| || || || | | | || | | || ||| Sbjct 1426 TACTCCACCAGCACTCTTAGAAATGAGTGCTACGTTCTTGAGAGTATC--GTAGATACCG 1369 Query 66671 TCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTG 66730 | || ||||| |||| || | || | | | || || || | ||| || ||||| || Sbjct 1368 TGGATAGAGTCGTCCTTCATCATGAGCAAGAAACAGGAGCTCATTTGAGGCTTGGGGGTA 1309 Query 66731 GCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTAC 66790 | || |||||| ||||||||||| || || || || || |||| || || Sbjct 1308 CCAGCGTTGAAGAGAGTGGGTGTAGCATGAGTGAACCAACGGTCGCTCATGAGGTTATAA 1249 Query 66791 GTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGG 66850 ||||| ||| | | |||| | ||| || || || | || || | || | | Sbjct 1248 GTCTCAATGGCTGAGTCAACATCTTCCTTGTGGATTCCTACTGAGACTCTGAGGAGCATG 1189 Query 66851 TATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTC 66910 | || || | ||| || | | | |||| | | ||||||||||| || |||||| Sbjct 1188 TGCTGGGGTCTTTCAACGATCTTGCCGTTGACTTTGAGCAAGTAGGAGCGCTCAAGGGTC 1129 Query 66911 TTGATACCAAAGTA 66924 |||| || ||||| Sbjct 1128 TTGAATCCGAAGTA 1115 >seq12789 Length=2278 Score = 104 bits (114), Expect = 2e-17 Identities = 367/565 (65%), Gaps = 15/565 (3%) Strand=Plus/Minus Query 61067 TCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGA 61126 |||||||| |||| | || || ||| |||||||| | | ||| | ||||||| Sbjct 1342 TCCCCATCAAGTACAACGACATCTGGAAAATGTACAAGGACCAGATGGCTGCATTCTGGA 1283 Query 61127 CGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT-TTATCGAGCGGT 61185 | ||||| |||| | ||| || | || ||||||||||| ||| || | Sbjct 1282 CATCTGAGGAAATCGACCTCGCCACCGATGTTAAGGACTGGGAGCGCCTTAATGA-CAAC 1224 Query 61186 GAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAAT 61245 ||| | || || | || || ||| | || ||||| || || || |||||||||||||| Sbjct 1223 GAAAAGCACTTTGTCAAGCACGTGCTCGCCTTCTTCGCTGCCTCCGACGGTATCGTCAAC 1164 Query 61246 GAGAATTTATTGGA-ACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTA 61304 ||||| | | | ||| || | | || | || ||| | ||||| || || ||||| Sbjct 1163 GAGAACCTCGCCCAGAAGTTCTGCACTG-AGATTCAGGTGCCCGAGGCTCGCTGCTTCTA 1105 Query 61305 CGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATAC 61364 || ||||| || |||||||| ||||||| |||| ||| | || |||||||| Sbjct 1104 TGGTTTCCAAATGATGATGGAGAACATCCACTCCGAGACCTACTCACTCCTGATCGATAC 1045 Query 61365 GTACATCAGGGAGCGGGCGGAACGTGAACGATTG----TTCAATGCCATCGAGACGATAC 61420 |||| || | || ||| || | ||||| || | | | || | Sbjct 1044 CCTCATCTCAGACCCTCATGA----GAAAGAGTTCCTCTTCAAGGCTACTGCAAACATCC 989 Query 61421 CGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACAT 61480 | | || | ||| || |||||||| || ||||||| | || || || | | Sbjct 988 CCGTCGTCACTAAGAAGGCTGATTGGGCTCTCCGCTGGATCAACG--ACCACAGCGCC-T 932 Query 61481 TTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTG 61540 | | || || | | || || || | || ||||| | || ||| || || || Sbjct 931 TCGCCGAGAGACTTGTTGCCTTCGCAGCTGTGGAGGGCATCTTCTTCTCCGGCTCTTTCT 872 Query 61541 CCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGT 61600 | | ||||| ||| | ||||||||||| || |||||||| ||||||||| ||| |||| Sbjct 871 GCTCCATCTTCTGGCTCAAGAAACGTGGCCTCATGCCCGGCCTGACCTTCTCCAACGAGT 812 Query 61601 TGATATCACGCGACGAGGGCATGCA 61625 |||| || || || ||||| ||||| Sbjct 811 TGATCTCCCGTGATGAGGGTATGCA 787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397445804866160