Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq24467 260 4e-65 >seq24467 Length=4469 Score = 260 bits (288), Expect = 4e-65 Identities = 594/878 (68%), Gaps = 42/878 (5%) Strand=Plus/Plus Query 2101 CCAATGATGAACATCATCAACGGTGGTTCTCACTCAGACGCTCCAATCGCTTTCCAAGAA 2160 |||||||||||| | |||||||||||| | || | || | | | || ||||| Sbjct 3496 CCAATGATGAACGTGATCAACGGTGGTGCGCATGCGGATAATAATTTGGACTTGCAAGAG 3555 Query 2161 TTTATGATTGTACCTGCTGGTGCACCAACATTCAAAGAAGCGCTTCGTTGGGGTGCTGAA 2220 || |||||| | || | ||| || ||||| ||| |||||| |||| | ||||||||| Sbjct 3556 TTCATGATTATTCCAGTTGGCGCGCCAACTTTCCGTGAAGCGATTCGCTACGGTGCTGAA 3615 Query 2221 ATCTTCCACGCGCTTAAGAAAATCCTTAAAGAACGTGGACTTGAA-ACAGCCGTAGGTGA 2279 | ||||| |||| | |||| ||| | || | |||| |||||||| || || Sbjct 3616 GTATTCCATA-GCTTGAAAAAAATCTTGCACGACAAAGGTTTGACGACAGCCGTTGGCGA 3674 Query 2280 CGAAGGTGGTTTCGCACCTCGTTTCGACGGAACT--GAAGATGGTGTTGAAACT-ATCAT 2336 |||||| |||||||||||| | || ||| ||||| | | | || | ||||| Sbjct 3675 CGAAGGCGGTTTCGCACCTTCCGTAGAA--AACCACGAAGAAGC-GATCAAGTTGATCAT 3731 Query 2337 CAAAGCTATCGAAGCTGCTGGATATGTACCAGGTAAAGACGTATTTATCGGACTTGACTG 2396 |||| || ||||| ||||| ||| |||||||| | | | | || | || || Sbjct 3732 TCAAGCGATTGAAGCAGCTGGTTATACACCAGGTACACAAATCGCGCTGGGCTTAGATTG 3791 Query 2397 TGCATCATCTGAATTCTACGATGCAGAACGTAAAGTTTACGACTACACTAAATTTGAAGG 2456 || | ||||||||| | ||| | ||| ||| | || ||||| Sbjct 3792 CGCCGCGAGCGAATTCTACAA---AGATGGCAAA---------TACCAT---TTGGAAGG 3836 Query 2457 TGAAGGCGCTGCTGTTCGTACTGCTGCAGAACAAATCGACTACCTTGAAG---AATTGGT 2513 || ||| || | || || || | | || |||| |||| | | ||||| Sbjct 3837 CGAGGGCTTGACTTT--GT----CTTCAACAGATTTC-ACTAACTTGTTGGCGACTTGGT 3889 Query 2514 TA-ACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTT 2572 ||||||| || |||||| |||||||||| || |||| |||| ||| ||||| || | Sbjct 3890 GCGACAAATATCCTATCATCTCTATCGAAGACGGCATGGCCGAAGGCGATTGGGAAGGGT 3949 Query 2573 GGAAATCTCTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCG 2632 || ||| |||||| || || ||||| ||| | ||||||||||| || |||| Sbjct 3950 GGGCGATTCTGACTGAAAAACTCGGCAAAAAAGTACAAATCGTTGGTGACGATTTGTTCG 4009 Query 2633 TAACTAACACTGCTTACCTTGAAA-AAGGTATTGCAGAACACGCT---GCTAACTCAATC 2688 | || ||||| | | ||||||| |||| || | || | | | || || || || Sbjct 4010 TGACAAACAC-GAAAATCTTGAAAGAAGGCAT---ACAAAAGGGTATCGCGAATTCTATT 4065 Query 2689 CTTATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCG 2748 || ||||| | |||||||||||||| ||||||||||| |||| || ||||||||||| Sbjct 4066 CTGATCAAGATCAACCAAATCGGTACATTGACTGAAACGTTTGCTGCAATCGAAATGGCA 4125 Query 2749 AAAGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACA 2808 ||| ||||| ||||| || || | ||||| ||||| |||||||| ||||| || Sbjct 4126 AAACGCGCTGGCTACACTGCGGTGATTTCACATCGTTCTGGTGAAACAGAAGACAGCACG 4185 Query 2809 ATCGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGT 2868 || || || || ||||| | || || || ||||| || ||||| || |||| ||| Sbjct 4186 ATTGCAGACATCGCAGTCGGTACAAATGCGTTGCAAATCAAAACAGGCTCGATGTCTCGT 4245 Query 2869 ACTGACCGTATTGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGGTGAAGTT 2928 |||| ||||| || |||||||| |||||| | ||||||||||| | | || ||| || Sbjct 4246 TCTGATCGTATGGCGAAATACAATCAATTGTTGCGTATCGAAGAAGATTTGGGCGAAATT 4305 Query 2929 GCAGAATACCGTGGTTTGAAATCATTCTACAACTTGAA 2966 || |||| ||| | | |||||||| ||||| Sbjct 4306 GCTAGCTACCCAGGTCGTGATGCGTTCTACAATTTGAA 4343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155991670302636