Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4 228 3e-57 >seq4 Length=637648 Score = 228 bits (252), Expect = 3e-57 Identities = 218/276 (79%), Gaps = 11/276 (4%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| ||||||||||||||||||||||| ||| ||||||||||||| ||||| Sbjct 184121 CCCGTCTTGAAACACGGACCAAGGAGTCTAACACTCGTGCAAGTGTTTGGGTGTTAAACC 184062 Query 468 CGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATC 527 ||| ||||||||||||||||| | | ||| || | || || || || ||| || Sbjct 184061 CGTACGCGTAATGAAAGTGAAAGCA--TGG---CCGCTTCGGCTGAACATGCGGCCGGTC 184007 Query 528 CTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAA 587 | ||| | |||||| | | | ||||| | |||| ||||||||||||||||||| Sbjct 184006 -----GCCTTTTGGTGGATT-GCGCAGTAGCATGGTTGTTAGGACCCGAAAGATGGTGAA 183953 Query 588 CTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGC 647 ||||||||| ||||| ||||| ||| |||| ||| |||||| ||||||| | ||| | Sbjct 183952 CTATGCCTGGATAGGATGAAGTCAGGCGAAAGCCTGATGGAGGTCCGCAGCGATACTGAC 183893 Query 648 GTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||| ||||||||| ||||||||||||||| Sbjct 183892 GTGCAAATCGTTCGTCAAATCTGGGTATAGGGGCGA 183857 Score = 136 bits (150), Expect = 2e-29 Identities = 125/157 (80%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| | | ||||||| || ||| | || || |||||| |||| ||| ||||||| Sbjct 184492 GAGTCGTGCTTTTTGGGATTGAAGCGCAAATTGTGAGGTAGTCTTCTCATAAGGCTAAAT 184433 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 184432 ATTGGTGTGAGACCGATAGTTTACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 184373 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||| ||| ||||| || |||||||| |||||||||| Sbjct 184372 AGAGTGTT-AAAAGTACCTGAAATTGCTGAAAGGGAA 184337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999806950