Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq4 351 2e-94 seq9 75.2 2e-11 >seq4 Length=637648 Score = 351 bits (388), Expect = 2e-94 Identities = 237/263 (90%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 181818 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 181877 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 181878 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCATCTCAATGATAGGAAGAGCCGA 181937 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181938 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 181997 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACT-AAAGGATCGATAG 269 ||||||||||||||||| |||||||||| | || || | |||| ||||||||||||| Sbjct 181998 CTGTGGTAACTTTTCTGACACCTCTAGCTGTATATCTC-ACAGACTCAAAGGATCGATAG 182056 Query 270 GCCACACTTTCATGGTTTGTATT 292 |||| |||||| ||||||||| Sbjct 182057 GCCATGCTTTCACAGTTTGTATT 182079 >seq9 Length=34474 Score = 75.2 bits (82), Expect = 2e-11 Identities = 126/181 (70%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 || || |||||| |||| ||| |||||||||||||| || ||| ||||||||||| Sbjct 12985 ACCAAACTGTCTTGCGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGTGAACAAA 13044 Query 107 CCAACGCTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 ||||| ||| |||| ||| || | | ||| || |||||||||||| | || Sbjct 13045 CCAACCCTTGGGACCGTCTTCAGCCCC---AGGATGCGATAAGCCGACATCGAGGTGCCA 13101 Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 || | |||| | || || ||| | | | |||| ||||||||| |||||||| Sbjct 13102 AACCTCCCCGTCAATGTGGACTCTTAGGAGAGATCAGCCTGTTATCCCTAGAGTAACTTT 13161 Query 224 T 224 | Sbjct 13162 T 13162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854399923104