Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq4 600 4e-169 >seq4 Length=637648 Score = 600 bits (664), Expect = 4e-169 Identities = 458/538 (85%), Gaps = 19/538 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| || ||| ||||||||||| ||| ||||| | |||||||||||||||||||| Sbjct 182114 CTTTTAGTCCACATGAGATTTCTGTCCTCATTGAGTTCGCCTTAGGACACCTGCGTTATC 182173 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||| ||||||||||||||||||||||||| | ||||| || | ||| Sbjct 182174 TTTTAACAGATGTACCGCCCCAGCCAAACTCCCCACCTGGCTATGTCTTCCGCGTTGATT 182233 Query 127 GGCCC------GCGAAG----GACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGT-TC 175 | || || | | || ||||| | | || | ||| ||| | ||| || Sbjct 182234 GTACCAGACGGGCTACGCCCAGAACTTAAAACAAAAACA----CGGCGAAC-CGAGTCTC 182288 Query 176 CGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG 235 | | | || ||||||||| |||| ||| ||||||||||||||| |||| || Sbjct 182289 AACATAACGGAATAAGTAAAACAACGTCAAGAGTAGTGGTATTTCACCGACGCCAAA--- 182345 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 |||||||||||| ||||||||||| |||| |||||||||| ||||||||||| ||||||| Sbjct 182346 GCTCCCACTTATCCTACACCTCTCGAGTCGTTTCACAAAGCCGGACTAGAGTGAAGCTCA 182405 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 182406 ACAGGGTCTTCTTTCCCCGCTGATTATGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 182465 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182466 GATGGCAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 182525 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182526 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 182585 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 182586 ATTGAATTTCATCACGTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 182643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635199852832