Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq4 102 1e-19 seq1 102 1e-19 >seq4 Length=637648 Score = 102 bits (112), Expect = 1e-19 Identities = 95/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | | ||| || || |||||| ||||||| ||| || ||| Sbjct 181789 GTACGAGAGGAACAGTTGG-TTCGGA-TACTTGGTTAATGCGGCTAGTTGAAAAGCTAGT 181732 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 || |||| ||||||||| | ||||| ||| |||||||||||||||||||||||||||| Sbjct 181731 GCTGCGAGGCTACCATCCGTTGGATAATGACTGAACGCCTCTAAGTCAGAATCCATGC 181674 >seq1 Length=3278253 Score = 102 bits (112), Expect = 1e-19 Identities = 95/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | | ||| || || |||||| ||||||| ||| || ||| Sbjct 2250680 GTACGAGAGGAACAGTTGG-TTCGGA-TACTTGGTTAATGCGGCTAGTTGAAAAGCTAGT 2250737 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 || |||| ||||||||| | ||||| ||| |||||||||||||||||||||||||||| Sbjct 2250738 GCTGCGAGGCTACCATCCGTTGGATAATGACTGAACGCCTCTAAGTCAGAATCCATGC 2250795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819199928576