Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20equi_20[genbank_20GCA_5F002189625.1_202017-06-12] 9 sequences; 9,791,141 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq5 145 6e-30 >seq5 Length=831028 Score = 145 bits (160), Expect = 6e-30 Identities = 496/765 (65%), Gaps = 20/765 (3%) Strand=Plus/Plus Query 65807 AAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGT 65866 || || || || | |||||||||||||| ||| || || | ||||| ||||| ||| Sbjct 46798 AACGTATCAGCTAAACCTTGAACTCCAACACCAATAGGCCTGTGACGGAAATTTGAATAC 46857 Query 65867 CTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACC 65926 || || || || |||||||| || |||| || || | ||||||||| ||| | Sbjct 46858 CTAGCTTCCTTCACTGGGTAGTAGTTTCTATCAATGATTTGGTTCAAATTGTATGTAATG 46917 Query 65927 ACATGCACGATACGTCGCAATTGTTC--GAAATCAAAATGTTTAGGACGATCGGGAGTGC 65984 ||| | ||| | | || ||| |||||||||| || | | || | | Sbjct 46918 ACACGTGAGATC--TTGTAAAGCTTCTTGAAATCAAAA-GTCTTCTCC--TCCTTATTA- 46971 Query 65985 CGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAG 66044 |||||| | || | || | || || | ||| |||||||| | || | Sbjct 46972 --------ACAAACATAGGTAAAGCGATTGAAGCCAAGTTACAGACAGCAACTTCTTTGC 47023 Query 66045 GAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCT 66104 | | ||||||| |||||||| ||||| || | |||||| |||| ||||| Sbjct 47024 TATCAGTATACTGTACAATTTCACAGCACAAGTTGGAAGATTTTATGGTACCCAGATTCT 47083 Query 66105 GTTGATTAC-TCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCA 66163 ||| ||| | ||||| ||||| ||||||||||| | ||| ||||| || || || ||| Sbjct 47084 TTTGGTTAGATTTTGCG-TTGCAGGCATCCTTGTAAAGCATATACGGCGTACCAGTTTCA 47142 Query 66164 ACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTA 66223 | ||| | | ||| || ||| | |||| | || | ||| |||| | Sbjct 47143 ATTTGACTTTGTAAGATTGCAAACCATAACTTTTGTGCGGGGATGGT-CTTACGGCCCAA 47201 Query 66224 -CCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAG 66282 || |||| || | ||| || || || |||||||| ||||| ||| Sbjct 47202 ACCAGCTTGTTCATACTTGGTGTAAAGAGCCTCAAATTCATCACCCCAGACTTCATACAA 47261 Query 66283 ACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCAT 66342 || | |||| || || ||||| || | ||||| ||| || || || ||| Sbjct 47262 ACCTCTGCACTCGTCAGGGCACATGAGAGTCCAATTTTCATTAGCCTCAACGCGTTTCAT 47321 Query 66343 AAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC 66402 ||| | |||||| ||||| || || ||||||||||| | ||||| ||||| || Sbjct 47322 AAACAAATCAGGGATCCATAGCGCATAGAAGAGATCTCTTGCTCTCAAATCCTCTGCACC 47381 Query 66403 GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGAT 66462 ||| |||||||||| || | | || ||| || || ||||||||||| |||| || || Sbjct 47382 GTGGTTTTTGCGCAGATCCAACATCTTAAATATATCCGCATGCCATGGCTCCAAATATAT 47441 Query 66463 GGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAA 66522 ||| ||||| ||| | | ||| || || || || || || || ||| |||| || Sbjct 47442 GGCAAACGAACCCCTTCTTTTACCACCCCCCTGATCAACATACTTGGCGGTTGTGTTAAA 47501 Query 66523 GACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 || ||||||||| || || | || ||||| | ||||| || || Sbjct 47502 GATACGCAACATTGGAACAATACCATTAGACTGTCCATTTGTACC 47546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567956391760