Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq4 194 7e-47 seq1 194 7e-47 >seq4 Length=570487 Score = 194 bits (214), Expect = 7e-47 Identities = 213/281 (76%), Gaps = 13/281 (5%) Strand=Plus/Minus Query 410 CGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCG 469 ||||||| |||||| ||||||||||||||| ||| |||||||||||| |||||||| Sbjct 311048 CGTCTTGAAACACGAGCCAAGGAGTCTAACACTCGTGCAAGTGTTTGGGTGGCAAACCCG 310989 Query 470 TGCGCGTAATGAAAGTGAACGGAGG----TGGGAACC---CGTGAGGGTGCACCATCGAC 522 | |||| |||||||||||| | | | ||||| ||| | ||| || | Sbjct 310988 TACGCGAAATGAAAGTGAAAGCATGGCCTTGGGACTTTGTCGTCTCAATTCACATGCGGC 310929 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 || || | ||| || |||||| | | | |||||| | |||| |||||||||||||| Sbjct 310928 CGGTC-----GCCTTTGGGTGGATT-GCGCAGGAGCATGGTTGTTAGGACCCGAAAGATG 310875 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 |||||||||||||| |||| ||||| ||| |||| ||| |||||| ||| ||| | Sbjct 310874 GTGAACTATGCCTGGGTAGGATGAAGTCAGGCGAAAGCCTGATGGAGGTCCGCCGCGATA 310815 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| |||||||| ||||||||||||||| Sbjct 310814 CTGACGTGCAAATCGTTCGTCAAACCTGGGTATAGGGGCGA 310774 Score = 127 bits (140), Expect = 9e-27 Identities = 123/157 (78%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| | | ||||||| || ||| | || || |||||| |||| ||| ||||||| Sbjct 311449 GAGTCGTGCTTTTTGGGATTGAAGCGCAAATTGTGAGGTAGTCTTCTCATAAGGCTAAAT 311390 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || ||||||||||||| ||||||| |||| ||||| ||||||| |||||| || Sbjct 311389 ACGGGTGTGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGGTGAAAAGAACTTTGAAA 311330 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||| ||| ||||| || ||||| || |||||||||| Sbjct 311329 AGAGTGTT-AAAAGTACCTGAAACTGCTGAAAGGGAA 311294 >seq1 Length=2540030 Score = 194 bits (214), Expect = 7e-47 Identities = 213/281 (76%), Gaps = 13/281 (5%) Strand=Plus/Minus Query 410 CGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCG 469 ||||||| |||||| ||||||||||||||| ||| |||||||||||| |||||||| Sbjct 921259 CGTCTTGAAACACGAGCCAAGGAGTCTAACACTCGTGCAAGTGTTTGGGTGGCAAACCCG 921200 Query 470 TGCGCGTAATGAAAGTGAACGGAGG----TGGGAACC---CGTGAGGGTGCACCATCGAC 522 | |||| |||||||||||| | | | ||||| ||| | ||| || | Sbjct 921199 TACGCGAAATGAAAGTGAAAGCATGGCCTTGGGACTTTGTCGTCTCAATTCACATGCGGC 921140 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 || || | ||| || |||||| | | | |||||| | |||| |||||||||||||| Sbjct 921139 CGGTC-----GCCTTTGGGTGGATT-GCGCAGGAGCATGGTTGTTAGGACCCGAAAGATG 921086 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 |||||||||||||| |||| ||||| ||| |||| ||| |||||| ||| ||| | Sbjct 921085 GTGAACTATGCCTGGGTAGGATGAAGTCAGGCGAAAGCCTGATGGAGGTCCGCCGCGATA 921026 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| |||||||| ||||||||||||||| Sbjct 921025 CTGACGTGCAAATCGTTCGTCAAACCTGGGTATAGGGGCGA 920985 Score = 127 bits (140), Expect = 9e-27 Identities = 123/157 (78%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| | | ||||||| || ||| | || || |||||| |||| ||| ||||||| Sbjct 921660 GAGTCGTGCTTTTTGGGATTGAAGCGCAAATTGTGAGGTAGTCTTCTCATAAGGCTAAAT 921601 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || ||||||||||||| ||||||| |||| ||||| ||||||| |||||| || Sbjct 921600 ACGGGTGTGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGGTGAAAAGAACTTTGAAA 921541 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||| ||| ||||| || ||||| || |||||||||| Sbjct 921540 AGAGTGTT-AAAAGTACCTGAAACTGCTGAAAGGGAA 921505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999806950