Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq4 607 3e-171 seq1 607 3e-171 >seq4 Length=570487 Score = 607 bits (672), Expect = 3e-171 Identities = 455/532 (86%), Gaps = 23/532 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||| ||| ||||| | |||| ||||||||| ||||| Sbjct 309007 CTTTTGGTCAACATGAGATTTCTGTCCTCATTGAGTTCGCCTTGGGACACCTGTGTTATC 309066 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||| ||||||||||||||||||||||||| | ||||| || | ||| Sbjct 309067 TTTTAACAGATGTACCGCCCCAGCCAAACTCCCCACCTGGCTATGTCTTCCGCGTTAATC 309126 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATT-- 184 || || |||| || | || |||| |||| | ||| ||| || Sbjct 309127 AGC------AGAGCCTTGT-GCAAAAACATGGC----GAAGCCAAGT----CTTAATACT 309171 Query 185 ---GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCC 241 || ||||||||| ||| ||| |||||||||||||||| ||||| | |||||| Sbjct 309172 ACGGAATAAGTAAAACAACATCAAGAGTAGTGGTATTTCACTGTCGCCGGA---GCTCCC 309228 Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||||| ||||||| |||||||| |||||||||| ||||||||||| ||||||||||||| Sbjct 309229 ACTTATCCTACACCCCTCAAGTCGTTTCACAAAGCCGGACTAGAGTGAAGCTCAACAGGG 309288 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 309289 TCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGAT 309348 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 309349 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 309408 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 309409 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 309468 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 309469 TTTCATCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 309520 >seq1 Length=2540030 Score = 607 bits (672), Expect = 3e-171 Identities = 455/532 (86%), Gaps = 23/532 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||| ||| ||||| | |||| ||||||||| ||||| Sbjct 919218 CTTTTGGTCAACATGAGATTTCTGTCCTCATTGAGTTCGCCTTGGGACACCTGTGTTATC 919277 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||| ||||||||||||||||||||||||| | ||||| || | ||| Sbjct 919278 TTTTAACAGATGTACCGCCCCAGCCAAACTCCCCACCTGGCTATGTCTTCCGCGTTAATC 919337 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATT-- 184 || || |||| || | || |||| |||| | ||| ||| || Sbjct 919338 AGC------AGAGCCTTGT-GCAAAAACATGGC----GAAGCCAAGT----CTTAATACT 919382 Query 185 ---GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCC 241 || ||||||||| ||| ||| |||||||||||||||| ||||| | |||||| Sbjct 919383 ACGGAATAAGTAAAACAACATCAAGAGTAGTGGTATTTCACTGTCGCCGGA---GCTCCC 919439 Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||||| ||||||| |||||||| |||||||||| ||||||||||| ||||||||||||| Sbjct 919440 ACTTATCCTACACCCCTCAAGTCGTTTCACAAAGCCGGACTAGAGTGAAGCTCAACAGGG 919499 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 919500 TCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGAT 919559 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 919560 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 919619 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 919620 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 919679 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 919680 TTTCATCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 919731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635199852832