Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq4 480 2e-133 seq1 480 2e-133 >seq4 Length=570487 Score = 480 bits (532), Expect = 2e-133 Identities = 411/500 (82%), Gaps = 23/500 (5%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 |||||||||||||||||| || |||| |||| ||||| ||||||||||||||| Sbjct 314023 TCATTCCAATTACAAGACTTTAA---GCCCCGTATTGTTATTTCTTGTCACTACCTCCCT 314079 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 314080 GTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCTC 314139 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCC 184 ||||||||||||||||||||||||||||||||||||||||||| | | || |||||||| Sbjct 314140 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTCGTTGCCCCGGTAGGCC 314199 Query 185 ACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAG 244 | || |||||| || |||| ||||||| |||||| |||||||| |||||| || ||| Sbjct 314200 AATACCCTACCGTCCAAAGCTGATAGGTCAGAAACTTGAATGATACATCGC--ACT-AAG 314256 Query 245 GCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTT 304 | ||||||| | ||||||||||||||| ||| || ||| | |||||||| Sbjct 314257 ----TACGATTCGCATATTTATTATGAATCACC--GGACACCGCAAGCGGTTTGGTTTTA 314310 Query 305 TATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATT 364 ||||||||| | | || || || | | ||||||||||| ||| |||| Sbjct 314311 GGTCTAATAAA-----CGCCGCCAAA----TGGCCTCGAACATGTATTAGCCCTACAATT 314361 Query 365 ACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCA 424 | |||||||||||||||| || | || ||||||||||| ||||||| | |||||||||| Sbjct 314362 AGCACGGTTATCCATGTAAAAACGAAC-ATCAAATAAACTATAACTGTTGTAATGAGCCA 314420 Query 425 TTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGAC 484 ||||||||||||| |||| | |||||||||||||||||||||||||||||||| |||| Sbjct 314421 TTCGCAGTTTCACCATATA-AAAGCTTATACTTAGACATGCATGGCTTAATCTTTAAGAC 314479 Query 485 AAGCATATGACTACTGGCAG 504 |||||||||||||||||||| Sbjct 314480 AAGCATATGACTACTGGCAG 314499 >seq1 Length=2540030 Score = 480 bits (532), Expect = 2e-133 Identities = 411/500 (82%), Gaps = 23/500 (5%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 |||||||||||||||||| || |||| |||| ||||| ||||||||||||||| Sbjct 924234 TCATTCCAATTACAAGACTTTAA---GCCCCGTATTGTTATTTCTTGTCACTACCTCCCT 924290 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 924291 GTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGTTTCTC 924350 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCC 184 ||||||||||||||||||||||||||||||||||||||||||| | | || |||||||| Sbjct 924351 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTCGTTGCCCCGGTAGGCC 924410 Query 185 ACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAG 244 | || |||||| || |||| ||||||| |||||| |||||||| |||||| || ||| Sbjct 924411 AATACCCTACCGTCCAAAGCTGATAGGTCAGAAACTTGAATGATACATCGC--ACT-AAG 924467 Query 245 GCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTT 304 | ||||||| | ||||||||||||||| ||| || ||| | |||||||| Sbjct 924468 ----TACGATTCGCATATTTATTATGAATCACC--GGACACCGCAAGCGGTTTGGTTTTA 924521 Query 305 TATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATT 364 ||||||||| | | || || || | | ||||||||||| ||| |||| Sbjct 924522 GGTCTAATAAA-----CGCCGCCAAA----TGGCCTCGAACATGTATTAGCCCTACAATT 924572 Query 365 ACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCA 424 | |||||||||||||||| || | || ||||||||||| ||||||| | |||||||||| Sbjct 924573 AGCACGGTTATCCATGTAAAAACGAAC-ATCAAATAAACTATAACTGTTGTAATGAGCCA 924631 Query 425 TTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGAC 484 ||||||||||||| |||| | |||||||||||||||||||||||||||||||| |||| Sbjct 924632 TTCGCAGTTTCACCATATA-AAAGCTTATACTTAGACATGCATGGCTTAATCTTTAAGAC 924690 Query 485 AAGCATATGACTACTGGCAG 504 |||||||||||||||||||| Sbjct 924691 AAGCATATGACTACTGGCAG 924710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510399864064