Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 174 1e-38 >seq3 Length=1317241 Score = 174 bits (192), Expect = 1e-38 Identities = 555/847 (66%), Gaps = 28/847 (3%) Strand=Plus/Plus Query 65729 GCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTAC 65788 ||| | || || || || ||||||||| ||||||||| || ||||| || |||| || Sbjct 1115606 GCATAGTACATTGTTTCAAAAATGCGTTTATTAAGTTCTCGAGCCTCGTCTGACTCGAAC 1115665 Query 65789 GGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACG 65847 || |||| ||| || | || || || || || ||||| || |||| ||| || || | Sbjct 1115666 GGG-TACCGCATTAGCATGAAGGTATCTGCTAGGCCTTGTACCCCAACACCCATCGGTCT 1115724 Query 65848 ATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCG 65907 ||| | ||||| ||| || || | |||||||||||||| | || || | Sbjct 1115725 ATGTCTGAAATTAGAAACCCTGGCTTGTTTCACAGGGTAGTAATTCCTGTCAATTACTTT 1115784 Query 65908 ATTCAAATTGCGTGTCACCACATGCACGATA-CGTCGCAATTGTTCGAAATCAAAATGTT 65966 ||| | || || | ||| | ||| | | | | || || |||||| || ||| Sbjct 1115785 ATTAAGGTTATAAGTGATTACACGGCAGATTTCATAG-AGTTTTTTGAAATCGAA-TGTC 1115842 Query 65967 TAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGC 66026 || | ||| | | |||||||| || || || | || || | || | Sbjct 1115843 ---------CGTGTCTGCGTGTTA--ACAAACTTTGGCAGCGCTACTGAAGCTAAATTAC 1115891 Query 66027 AGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGC 66086 | || || | |||||| || | | ||| ||||| ||| || |||||| | Sbjct 1115892 ACACTGCAACCTCGTCCTTGTTTGTGAATTGGACGATTTCACAGCAGAGGTTACTGGATT 1115951 Query 66087 GTATGGTGCCCAAATTCTGTTGATTACTCTT-GCGATTGCATGCATCCTTGTACATCATG 66145 || |||||||||||||| || |||||||| ||| || ||||| |||||||| | |||| Sbjct 1115952 TAATAGTGCCCAAATTCTGCTGGTTACTCTTAGCG-TTACATGCGTCCTTGTATAACATG 1116010 Query 66146 TACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCA-AAGAGCGCG--TGCC 66202 ||||||||||| ||||| | |||||||| | || || ||| || | | || Sbjct 1116011 TACGGAGTGCCAGTCTCGATTTGGGACTGGAGAATTGCAAACCACAACTTCTGGGCTGGG 1116070 Query 66203 TTCACCGTACGTACC--GCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGG 66260 | | | ||| || ||||| | ||| || || || || | |||| || Sbjct 1116071 ATTGTCTTTCGTCCCAAGCCCTGC---TGC--TCATACTGAGTATACAAACGTTCAAACT 1116125 Query 66261 ATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCAC 66320 || ||||| || ||| ||||| | ||||| | |||||||||||| | ||||| Sbjct 1116126 CGTCTCCCCAAACCTCGTGCAGACCTCTACACTCATCTGGACACATCAGTGTCCAATTCT 1116185 Query 66321 CATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGC 66380 || || || || ||| || || || || ||||| || |||||||| | ||| | Sbjct 1116186 TATTTGCCTCAACTCGTTTCATGAACAGGTCTGGGATCCACAGCGCGTAGAATAAATCCC 1116245 Query 66381 GTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGG 66440 ||| || || || || |||||| ||||| | | || | |||| || || || | Sbjct 1116246 TTGCACGCTGGTCTTCTGCGCCGTGGTTTTTCCTGAGATCTAACAACTTGAAAATATCCG 1116305 Query 66441 CATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGA 66500 ||||||| || ||||| || || || || ||||| ||||||| || ||||||||||| | Sbjct 1116306 CATGCCAAGGCTCCAGATATATCGCAAATGAGCCTTTACGTTTTCCACCACCTTGGTCCA 1116365 Query 66501 CGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCAT 66560 |||| || ||| || | || ||| || |||| |||||| || |||| | Sbjct 1116366 CGTACTTGGCCGTCGCGTTAAATATCTTCAGCATGGGCACGATCCCGTTGGAAATGCCGT 1116425 Query 66561 TGGTGCC 66567 ||||||| Sbjct 1116426 TGGTGCC 1116432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567956391760