Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2236 185 7e-42 >seq2236 Length=21742 Score = 185 bits (204), Expect = 7e-42 Identities = 418/618 (68%), Gaps = 18/618 (3%) Strand=Plus/Plus Query 65701 GGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATT 65760 ||| |||| ||||||| |||||| |||||||| || || |||||| ||| || || Sbjct 11758 GGCGAGTTCGCAGCTGGCCTCGAGAGCGGCAAAGTAGATACACTCGAAGATGTTTCTGTT 11817 Query 65761 AAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGG-ACAAAAGTGTCGGCCA 65819 | | || || || ||| ||| |||| ||| | | | | | || | ||| || | Sbjct 11818 CAAGACGCGAGCTTCGGGGCTGTCGAACGG-ATAGCGAAGAAGCATGAAGGCGTCTGCGA 11876 Query 65820 GACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCT-CGCCTCAGGT 65878 ||||||| ||||| | ||||| || || || ||||| ||| | ||| ||| || || Sbjct 11877 GACCTTGGACTCCCAAACCGACAGGTCGGTGCCGCAAGTTGCT-CTTCTTCGCTTCTGGG 11935 Query 65879 ACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATA 65938 || |||||||| || |||||| | ||| ||||| || | |||| || | ||||| Sbjct 11936 ACTGGGTAGTAGTTTCGATCGATCACGCGGTTCAAGTTTCTCGTCATGACTTTGACGATT 11995 Query 65939 CGTCGCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAAC 65998 || ||| |||||| | || ||| || || | ||| | || |||| ||| Sbjct 11996 CGCTTCAAGTGTTCGTAGTCGAAAG--TTCGG-CTCTCGCG-GT--------CCACGAAC 12043 Query 65999 TTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCG 66058 ||||| || | | || || | |||||||||||| | |||||| ||||| ||| Sbjct 12044 TTGGGCAGCGAGACGGAGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCGTATATTCG 12103 Query 66059 ACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTG 66118 || | ||| ||||||| || ||||| || || ||||| |||| || || ||||| Sbjct 12104 ACGACTTCTGTGCACAAGTTGCTGCACTTGATCGTTCCCAAGTTCTTCTGGTTGCTCTTC 12163 Query 66119 CGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATG 66178 ||||||||||| || ||||||| ||||||||| || || ||||| | || | || | Sbjct 12164 CGATTGCATGCGTCTTTGTACAGCATGTACGGCGTCCCCGTCTCGATCTGCGCCTGGAGA 12223 Query 66179 ATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCC-CTACCTTTGCGTTCGTA 66237 || || ||||||| | || | ||| | | | ||| | ||||| ||||||||| Sbjct 12224 ATCGCAAACCAAAGATGCTGAGCTGGAATCGT-CTTCCGGCCTCGACCTTCGCGTTCGTA 12282 Query 66238 ATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTG 66297 | ||||| | | || ||| || ||||| || || | || || || || | || Sbjct 12283 GCGCTCGTACAACTCTTTGAATTCGTCGCCCCACACCTCCGTCAAACCGGGGCATTCGTT 12342 Query 66298 TGGACACATCAGCGACCA 66315 || |||||||||| ||| Sbjct 12343 AGGGCACATCAGCGTCCA 12360 Score = 152 bits (168), Expect = 4e-32 Identities = 179/241 (74%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 66327 GTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTC 66386 |||| ||||| ||| || ||||| || |||||||||||| ||||||| ||||| || | Sbjct 12765 GTTC-ACACGTTCCATGAAGAGATCTGGGATCCAGAGGGCGCAGAAGAGGTCGCGCGCCC 12823 Query 66387 GTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCC 66446 || |||| || |||| || || || | ||||||||| ||||| | || |||| Sbjct 12824 GTCGCTCTTCCTTGCCATGGTTCTTCTTGATGTCGAGGAAATCAAAAACATCAAAGTGCC 12883 Query 66447 ATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGC 66506 | ||||||| ||| ||||||| ||| | ||||||||||| || ||||||||||||| Sbjct 12884 AAGGTTCCAAGTAAATGGCGAGGCTGCCTTTGCGTTTGCCGCCGCCCTGGTCGACGTAGC 12943 Query 66507 GAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGC 66566 | ||| | | ||||||||| | | |||||| | || || || || | |||||| || | Sbjct 12944 GCGCGGCGTCGTTGAAGACTCTGAGCATCGGCAGAAGGCCATTCGAGTAGCCATTCGTTC 13003 Query 66567 C 66567 | Sbjct 13004 C 13004 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 65074 CGAATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCC 65133 ||| ||||| ||||||| |||||| | || ||||||| |||| || ||||||| || Sbjct 10234 CGAGTCGACAGTGAACTTGATCGCGTCCGCTGCCGCCTGCGTCCGGAGGTAGTACAGCCC 10293 Query 65134 GGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGG 65193 || || ||||| | | ||| | || || ||||| | || | || || || | || Sbjct 10294 AGTTTTCAGGCCGCCTCTCCAGCCGTAAAAGTGCATAGTGGAGAGCTTCGCGTAGGTTGG 10353 Query 65194 CTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGC 65253 | | ||| || || |||| ||| ||| ||| |||||| | | | || || || Sbjct 10354 ATTGACCATGTGGATGTTCAGCGAGTGAGACTGGTCGATGAACGGTGCCCGGTCGATCGC 10413 Query 65254 CATGTCAATGATACGACGTCCCGAT--ATCTCCCAGACGGTCTTGTACAG 65301 || ||| | || ||||| | | | |||||||| |||||||||||||| Sbjct 10414 CAGGTCGAGGA--CGACGCGCTGCTTGATCTCCCAAACGGTCTTGTACAG 10461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397540299076880