Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq39865 221 2e-55 seq38902 206 4e-51 seq3794 185 1e-44 >seq39865 Length=6310 Score = 221 bits (244), Expect = 2e-55 Identities = 209/258 (81%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||| ||| |||| | ||||| |||||||||||||||| | Sbjct 2208 GTACAAAGGGCAGGGACTTAATCAGCGCAAGCT-GTTGACTTGCGCTTACTAGGAATT-C 2151 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATT 119 |||||| |||| ||| |||| ||| |||||||||| ||||||| | | ||| | |||| Sbjct 2150 CTCGTTCAAGATCAAGAATTACAAAGATCTATCCCTATCACGACGCATATTGCT--GATT 2093 Query 120 ACCCGGA-CCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| | ||| |||| || || ||||| || || | |||||||||| ||||||| Sbjct 2092 ACCAGCTGCCTTTCGGAGCTGG-GAAGTACTCGCTGTATGCGTCAGTGTAGCACGCGTGC 2034 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG-GCCTAA 237 ||||||| |||||||||||||||||||||||||||||||||||||||||| || || | | Sbjct 2033 GGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGTGCTTGA 1974 Query 238 AAGGCCATCTCCCTCGAA 255 || | || |||||| || Sbjct 1973 AACACAATGTCCCTCTAA 1956 >seq38902 Length=509 Score = 206 bits (228), Expect = 4e-51 Identities = 190/233 (82%), Gaps = 7/233 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||| ||| || | |||||| |||||||||||||||| | Sbjct 154 GTACAAAGGGCAGGGACTTAATCAGCGCAAGGTA-ATGACTTGCGCTTACTAGGAATT-C 211 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATT 119 |||||| |||| | | |||| ||| |||||||||||||||||| | | ||| | |||| Sbjct 212 CTCGTTCAAGATCTATAATTCCAAAGATCTATCCCCATCACGACGCATATTGCT--GATT 269 Query 120 ACCCGGA-CCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| | ||| ||| || || ||||| || || | |||||||||| ||||||| Sbjct 270 ACCAGCTGCCTCACGGAGCTGG-GACGTACTCGCTGTATGCGTCAGTGTAGCACGCGTGC 328 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 ||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 329 GGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTG 381 >seq3794 Length=581 Score = 185 bits (204), Expect = 1e-44 Identities = 180/228 (79%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| | | |||||| || |||||||||||| | Sbjct 24 GTACAAAGGGCAGGGACGTAATCAACGCACGAT-GATGACATACGTTTACTAGGAATT-C 81 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| |||||| | |||| ||| | ||||||||||||||||| | || | || || Sbjct 82 CTCGTTCAAGACCCATAATTACAAGGGTCTATCCCCATCACGATACACATT-AGAGGTTC 140 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 || | ||| |||| ||| ||| |||| | ||||||||||| ||||||| | Sbjct 141 CCTAGTCCTTTCGGATTTGGT-----ACTTGTTGTGTGTATCAGTGTAGCACGCGTGCAG 195 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||| | || |||||||||||||||| |||||||||||||||||||| Sbjct 196 CCCAGGATATATAAGGGCATCACAGACTTGTTATTGCCTCAAACTTCC 243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751690984870