Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq27534 131 9e-29 seq39865 125 4e-27 seq36064 89.7 3e-16 >seq27534 Length=780 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| | |||||| || Sbjct 242 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCC 301 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 302 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 358 >seq39865 Length=6310 Score = 125 bits (138), Expect = 4e-27 Identities = 100/121 (83%), Gaps = 11/121 (9%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGC-- 58 ||||||||||||||||||||||| |||||| |||| | | ||||| | ||| Sbjct 1682 GAACCCAAAGACTTTGATTTCTCATAAGGTTCCGAAGGCG-------GATAAGAACGCAC 1630 Query 59 --CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCG 116 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 1629 CTCCGATCCCTAGTTGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTTG 1570 Query 117 A 117 | Sbjct 1569 A 1569 >seq36064 Length=616 Score = 89.7 bits (98), Expect = 3e-16 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||| ||||||||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 30 CCAATCTCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTTGA 88 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278289289020