Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq39865 266 6e-69 seq27534 242 7e-62 seq36064 203 6e-50 seq27648 132 9e-29 >seq39865 Length=6310 Score = 266 bits (294), Expect = 6e-69 Identities = 208/246 (85%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGG 132 |||||| |||| |||||||||||||| || |||||| | || |||||||||||||||| Sbjct 1325 TTTTACCTTGAGAAAATTAGAGTGTTTAAGGCAGGCATGCGCCTGAATACATTAGCATGG 1384 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 |||||||||||||||| | | ||| ||||||||||| |||| |||||||||| Sbjct 1385 AATAATAGAATAGGACTTTGG--TCTCCTTTGTTGGTTTGAGGGACTAGAGTAATGATTA 1442 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 ||||||| ||| ||||| | |||||| ||||||||||||||||||||| ||||||||| Sbjct 1443 ATAGGGACAGTTGGGGGCATTAGTATTTAATTGTCAGAGGTGAAATTCTCGGATTTATTA 1502 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||||||||| ||||||||| || |||||||||||||||||||||| |||||||||| Sbjct 1503 AAGACTAACTTATGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGT 1561 Query 313 TAGGGG 318 |||||| Sbjct 1562 TAGGGG 1567 >seq27534 Length=780 Score = 242 bits (268), Expect = 7e-62 Identities = 203/245 (83%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGA 133 |||||||||| ||||||||||| |||||||| ||| | |||| | |||||||||||||| Sbjct 602 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 543 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | |||||| | |||| ||||| |||||| | ||| || ||||||||||| Sbjct 542 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAA 484 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||| ||||||||| | ||||| || |||||||||||||||||||||||||| | Sbjct 483 TAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAA 424 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||| ||||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 423 AGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 365 Query 314 AGGGG 318 |||| Sbjct 364 GGGGG 360 >seq36064 Length=616 Score = 203 bits (224), Expect = 6e-50 Identities = 195/245 (80%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 ||||| |||| |||| ||||||||| | |||||| | || |||| |||||||| Sbjct 330 TTTACCTTGAGCAAATGAGAGTGTTCCAGGCAGGCTTGGGCCTGAATCGTCCAGCATGGA 271 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 ||||||||| ||||| || || || |||| ||||| | || | ||||||||||| Sbjct 270 ATAATAGAAGAGGAC-TG-GGCTCCATTTA-TTGGTGTTATGGCGCTTAGTAATGATTAA 214 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||||||| ||||| | ||||| ||||||||||||||||||||| |||||||| | Sbjct 213 TAGGGATAGTTGGGGGCATTTGTATTTAATTGTCAGAGGTGAAATTCTATGATTTATTAA 154 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| |||| ||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 153 AGACAAACTTATGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 95 Query 314 AGGGG 318 | ||| Sbjct 94 AAGGG 90 >seq27648 Length=428 Score = 132 bits (146), Expect = 9e-29 Identities = 112/137 (82%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGG 132 |||||| |||| ||||||||||||||| | |||||| || |||||||||||||||| Sbjct 138 TTTTACCTTGAGAAAATTAGAGTGTTCCAGGCAGGCTAGCGCCGGAATACATTAGCATGG 79 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 |||||||||||||||| | | ||| ||||||||||| |||| | |||||||||| Sbjct 78 AATAATAGAATAGGACTTTAG--TCTCCTTTGTTGGTTTGAGGGACTGAAGTAATGATTA 21 Query 193 ATAGGGATAGTCGGGGG 209 ||||||| ||| ||||| Sbjct 20 ATAGGGACAGTTGGGGG 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914811790464