Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq39865 325 6e-87 seq3794 262 6e-68 seq38902 219 7e-55 seq27534 178 2e-42 >seq39865 Length=6310 Score = 325 bits (360), Expect = 6e-87 Identities = 230/259 (89%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | |||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 2066 TACTCGCTGTATGCGTCAGTGTAGCACGCGTGCGGCCCAGGACATCTAAGGGCATCACAG 2007 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGCCAG 119 ||||||||||||||||||||||| | ||| ||| | |||| |||||||||||||| | | Sbjct 2006 ACCTGTTATTGCCTCAAACTTCCTTGTGCTTGAAACACAAT-GTCCCTCTAAGAAGTC-G 1949 Query 120 CCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | | ||| | || || | | ||| |||| ||| ||||||||||||||||| ||||||| Sbjct 1948 CGAACAATAAACGTTGAAGCGACTAGTTAGTAGGCTAAGGTCTCGTTCGTTAACGGAATT 1889 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1888 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 1829 Query 240 AAAGAGCTATCAATCTGTC 258 ||||||||||||||||||| Sbjct 1828 AAAGAGCTATCAATCTGTC 1810 >seq3794 Length=581 Score = 262 bits (290), Expect = 6e-68 Identities = 209/246 (85%), Gaps = 9/246 (4%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| ||||||| |||||| | || |||||||||||||||| |||||||||||| Sbjct 176 TCAGTGTAGCACGCGTGCAGCCCAGGATATATAAGGGCATCACAGACTTGTTATTGCCTC 235 Query 76 AAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGCCAGCCACCA-ACCATA-G 132 |||||||||| | || | | | | |||| |||||||||| | | | ||| | Sbjct 236 AAACTTCCATAG--TGTTACCACTACAGTCTCTCTAAGAAGTTAAAACGTATAGAATACG 293 Query 133 TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 || | ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 294 TCAAA----CTATTTAGCAGATTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 349 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 350 ACTCCACCAACTAAGAACAGCCATGCACCACCACCCATAAAATCAAGAAAGAGCTATCAA 409 Query 253 TCTGTC 258 |||||| Sbjct 410 TCTGTC 415 >seq38902 Length=509 Score = 219 bits (242), Expect = 7e-55 Identities = 184/222 (83%), Gaps = 14/222 (6%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 |||||| || | |||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 296 TACTCGCTGTATGCGTCAGTGTAGCACGCGTGCGGCCCAGGACATCTAAGGGCATCACAG 355 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA-----G 115 ||||||||||||||||||||||| ||| | | | | |||||||||||||| | Sbjct 356 ACCTGTTATTGCCTCAAACTTCC-TTGTGTTTAGTCACAAAGTCCCTCTAAGAAGTCGTG 414 Query 116 CCAGC-CACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174 || || | |||| ||||| ||| |||| ||| ||||||||||||||||| || Sbjct 415 CCCGCTTAGCAAC--GGGTCGA-----CTAGTTAGTAGGCTAAGGTCTCGTTCGTTAACG 467 Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216 |||||||||||||||||||||||||||||||||||||||||| Sbjct 468 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 509 >seq27534 Length=780 Score = 178 bits (196), Expect = 2e-42 Identities = 107/113 (95%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 146 TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTA 205 |||||||| | ||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 2 TTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTA 61 Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 62 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC 114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796472575458