Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq39865 152 5e-35 seq27534 134 1e-29 seq27648 104 2e-20 seq36064 102 8e-20 >seq39865 Length=6310 Score = 152 bits (168), Expect = 5e-35 Identities = 143/180 (79%), Gaps = 3/180 (2%) Strand=Plus/Plus Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGG 71 |||||| |||| |||||||||| ||| || |||||| | || |||||||||| ||||| Sbjct 1325 TTTTACCTTGAGAAAATTAGAGTGTTTAAGGCAGGCATGCGCCTGAATACATTAGCATGG 1384 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||||||||||||| | | ||| ||||| ||||| ||| | |||||||| Sbjct 1385 AATAATAGAATAGGACTT--TGGTCTCCTTTGTTGGTTT-GAGGGACTAGAGTAATGATT 1441 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTATT 191 |||| ||| ||| ||||| | |||||| |||||||| |||||||||||| ||||||||| Sbjct 1442 AATAGGGACAGTTGGGGGCATTAGTATTTAATTGTCAGAGGTGAAATTCTCGGATTTATT 1501 >seq27534 Length=780 Score = 134 bits (148), Expect = 1e-29 Identities = 139/178 (78%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGA 72 |||||||||| ||||||||| | |||||||| ||| | |||| | |||||||| ||||| Sbjct 602 TTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCATCGCTCTGGATACATTAGCATGGG 543 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | |||||| | |||| ||||| ||| || | ||| || |||||||| | Sbjct 542 ATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTA 485 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 ||| ||| ||||||||| | ||||| || |||| ||||||||||||||||||||| Sbjct 484 ATAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 427 >seq27648 Length=428 Score = 104 bits (114), Expect = 2e-20 Identities = 107/138 (78%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 12 TTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGG 71 |||||| |||| |||||||||| |||| | |||||| || |||||||||| ||||| Sbjct 138 TTTTACCTTGAGAAAATTAGAGTGTTCCAGGCAGGCTAGCGCCGGAATACATTAGCATGG 79 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||||||||||||| | | ||| ||||| ||||| |||| | |||||||| Sbjct 78 AATAATAGAATAGGACTTTAG--TCTCCTTTGTTGGTTTGAGGGACTG-AAGTAATGATT 22 Query 132 AATACGGATAGTCGGGGG 149 |||| ||| ||| ||||| Sbjct 21 AATAGGGACAGTTGGGGG 4 >seq36064 Length=616 Score = 102 bits (112), Expect = 8e-20 Identities = 133/179 (74%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCATGGA 72 ||||| |||| |||| |||| |||| | |||||| | || |||| | |||||| Sbjct 330 TTTACCTTGAGCAAATGAGAGTGTTCCAGGCAGGCTTGGGCCTGAATCGTCCAGCATGGA 271 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 ||||||||| ||||| || || || |||| | ||| | || | | |||||||| | Sbjct 270 ATAATAGAAGAGGAC-TG-GGCTCCATTTATT-GGTGT-TATGGCGCTTAGTAATGATTA 215 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTATT 191 ||| ||||||| ||||| | ||||| |||||||| |||||||||||| |||||||| Sbjct 214 ATAGGGATAGTTGGGGGCATTTGTATTTAATTGTCAGAGGTGAAATTCTATGATTTATT 156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511789606720