Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq39865 219 8e-55 seq38902 219 8e-55 seq3794 208 1e-51 >seq39865 Length=6310 Score = 219 bits (242), Expect = 8e-55 Identities = 240/312 (77%), Gaps = 8/312 (3%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || |||||||||| ||| |||| ||| | | | || | |||| | |||||||| Sbjct 1901 GAACGAGACCTTAGCCTACTAACTAGTCGCTTCAACGTTTATTGTTCGC-GACTTCTTAG 1959 Query 80 AGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 |||||| | | | ||||| | |||||||||||||||||||||||||||||||||||| Sbjct 1960 AGGGACATTGTGTTTCAAGCACAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 2019 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 |||||| |||||||||||||| ||||||||||| | || ||||| | || || || Sbjct 2020 AGATGTCCTGGGCCGCACGCGTGCTACACTGACGCATACAGCGAGTACTTC-CCAGCTCC 2078 Query 199 GGAAGG--TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 | |||| || ||||||| || | |||||| | |||||||| | ||| |||| Sbjct 2079 GAAAGGCAGCT-GGTAATC--AGCAATATGCGTCGTGATAGGGATAGATCTTTGTAATTC 2135 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 ||| |||| |||||||||| |||||||||||| |||| |||| ||| |||||| |||| Sbjct 2136 TTGATCTTGAACGAGGAATTCCTAGTAAGCGCAAGTCAACAGCTTGCGCTGATTAAGTCC 2195 Query 317 CTGCCCTTTGTA 328 |||||||||||| Sbjct 2196 CTGCCCTTTGTA 2207 >seq38902 Length=509 Score = 219 bits (242), Expect = 8e-55 Identities = 241/313 (77%), Gaps = 11/313 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCT--TTGGCGGGTCGCCGGCTTCTT 77 || |||||||||| ||| |||| ||| | | |||| | | ||||| || |||||| Sbjct 460 GAACGAGACCTTAGCCTACTAACTAGTC-GACCCGTTGCTAAGCGGGCA--CGACTTCTT 404 Query 78 AGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 ||||||||| | | || | | ||||||||||||||||||||||||||||||||||| Sbjct 403 AGAGGGACTTTGTGACTAAACACAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 344 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||| |||||||||||||| ||||||||||| | || ||||| | || || | Sbjct 343 TAGATGTCCTGGGCCGCACGCGTGCTACACTGACGCATACAGCGAGTACGTC-CCAGCTC 285 Query 198 CGGAAGG--TCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 || ||| || ||||||| || | |||||| |||||||||| | ||| |||| Sbjct 284 CGTGAGGCAGCT-GGTAATC--AGCAATATGCGTCGTGATGGGGATAGATCTTTGGAATT 228 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 || | |||| |||||||||| |||||||||||| ||||| | | ||| |||||| ||| Sbjct 227 ATAGATCTTGAACGAGGAATTCCTAGTAAGCGCAAGTCATTACCTTGCGCTGATTAAGTC 168 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 167 CCTGCCCTTTGTA 155 >seq3794 Length=581 Score = 208 bits (230), Expect = 1e-51 Identities = 202/257 (79%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||||| |||| | | || | |||||||||||||||||||||| |||||||| Sbjct 274 CTTCTTAGAGAGACTGTAGTGGTAACACTATGGAAGTTTGAGGCAATAACAAGTCTGTGA 215 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 |||||||| || | |||||| ||||||| |||||||||| | | |||| ||| | || Sbjct 214 TGCCCTTATATATCCTGGGCTGCACGCGTGCTACACTGATACACACAACAAGTAC--CAA 157 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 | ||| |||| || || || || ||| | | ||||| |||||||||| | ||| Sbjct 156 AT---CCGAAAGGACTAGGGAACCTC--TAATGTGTATCGTGATGGGGATAGACCCTTGT 102 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 |||||| | |||| |||||||||| |||||||| || |||||||| | |||||||||| Sbjct 101 AATTATGGGTCTTGAACGAGGAATTCCTAGTAAACGTATGTCATCATCGTGCGTTGATTA 42 Query 312 CGTCCCTGCCCTTTGTA 328 ||||||||||||||||| Sbjct 41 CGTCCCTGCCCTTTGTA 25 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946798216704