Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq39865 596 5e-168 >seq39865 Length=6310 Score = 596 bits (660), Expect = 5e-168 Identities = 455/532 (86%), Gaps = 17/532 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| || ||||||||||| ||||| Sbjct 5502 CTTTTGGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTACCCTAGGACACCTGTGTTATC 5443 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAAC----CCG 122 ||||||||||||||||||||||||||||||||||||||||| ||||| || || | Sbjct 5442 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCTTCCACATTACTC 5383 Query 123 GATCGGCCCGCGAAGGACCTTAACGCCAGAAAATGG-TCGGTGAAGACCAGTTCCGCTTC 181 |||||| |||| |||| || | || | | || || | | || | | Sbjct 5382 AATCGGCAAGCGATA----TTAAGGCTATAACCTCTCTTGGAGAGGGC--GTAACC--TA 5331 Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCC 241 || || |||||||| ||| || |||||||||||||||| | || | ||||||| Sbjct 5330 ATGGAATAAGTAAAGTAACCATGGAAGTAGTGGTATTTCACT---GTTGACA-GGCTCCC 5275 Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||||| |||||||| || | || ||||||||||||||||||||||||||||||||||| Sbjct 5274 ACTTATCCTACACCTTCCAGGCCACTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 5215 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 5214 TCTTCTTTCCCCGCTGATTATGCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGT 5155 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAG 421 ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 5154 AGATAGGGACAGTGGGAATCTCGTTGATCCATTCATGCGCGTCACTAGTTAGATGACGAG 5095 Query 422 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5094 GCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAA 5035 Query 482 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 5034 TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 4983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634506380864