Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq39865 508 2e-141 seq18437 273 7e-71 >seq39865 Length=6310 Score = 508 bits (562), Expect = 2e-141 Identities = 397/466 (85%), Gaps = 10/466 (2%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| ||||||||||||||| | | |||||||||||||| ||||||||||||||||| Sbjct 1065 TATTTCTTGTCACTACCTCCCTGAATTAGGATTGGGTAATTTACGCGCCTGCTGCCTTCC 1006 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 || |||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 1005 TTAGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATCCTCCGTTA 946 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| | ||||||||| ||| || ||||||||||||| |||| ||||||||| ||| Sbjct 945 CCCGTGAAAGCCATGGTAGTCCAATACACTACCATCGAAAGCTGATGGGGCAGAAACTTG 886 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGG 281 ||||| |||| |||| | | ||||||||||||| | ||||||||||| || || | Sbjct 885 AATGATTTATCG-CGGC-CGAAGCCATGCGATTCGATCAGTTATTATGAGTCGTCACAAT 828 Query 282 AGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTT 339 || | ||| | ||||||| |||||||||||||||| ||||||| ||||| || || Sbjct 827 AGACACGAGGAATATTGGTTTGTTATCTAATAAATACAGCCCTTCCAAAAAGTCAGGCTT 768 Query 340 TTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT-ACTATCAAA 398 ||||||||||||||||||||||||||||| |||||||||| || | | ||||||| Sbjct 767 GACAGCATGTATTAGCTCTAGAATTACCACGGGTATCCATGTA--AATTTGATTATCAAA 710 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||||| ||||||| |||||||||||||||||||||||||||||| | || ||||||| Sbjct 709 TAAACTATAACTGTTTTAATGAGCCATTCGCAGTTTCACTGTAT--AACACTCATACTTA 652 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 651 GACATGCATGGCTTAGTCTTTGAGACAAGCATATGACTACTGGCAG 606 >seq18437 Length=432 Score = 273 bits (302), Expect = 7e-71 Identities = 313/420 (75%), Gaps = 43/420 (10%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||| | ||||||||||||||| | || |||||||||||||| |||||||||||| ||| Sbjct 55 TATATCTTGTCACTACCTCCCTGAATCAGGATTGGGTAATTTACGCGCCTGCTGCAATCC 114 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 | ||| | |||||| ||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 115 GTAGATCTAGTAGCCATTTCTCAGGCTCCTTCTCCGGAATCGAACCCTAATTCTCCGTTA 174 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAG-TTGATAGGGCAGAAATTT 221 ||||| | ||||||||| ||| || |||| |||| ||| |||||||||||||| || Sbjct 175 CCCGTGAAAGCCATGGTAGTCCAATACACTACTATCGTAAGCATGATAGGGCAGAAACTT 234 Query 222 GAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGG 281 |||| ||| | | | || || |||| | ||||||||||||||||||| | Sbjct 235 ATATGATTTATCTCAGCAT--AG---TTGAGATTTGCTAAGTTATTATGAATCACCTA-- 287 Query 282 AGCCCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTT 341 |||| ||||||||||||||| || ||| | || Sbjct 288 -------------TTTGG---AATATCTAATAAATACAACCTTTC----------GGCTT 321 Query 342 TAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAA 401 | ||||||||||||||||| || | || ||||||||| || | |||||||||| Sbjct 322 TGGCATGTATTAGCTCTAG-TTTTCTACAGTTATCCATTTAAT------GTATCAAATAA 374 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGAC 461 || ||||||| |||||||||||||||||||||| ||||| | || |||||||||||| Sbjct 375 ACTATAACTGTTTTAATGAGCCATTCGCAGTTTTACTGTGT--GTTATTTATACTTAGAC 432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509759318528