Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Uroleptopsis_20citrina_20[genbank_20GCA_5F001653735.1_202016-05-31] 42,418 sequences; 32,347,234 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3222 214 1e-50 seq25860 114 1e-20 >seq3222 Length=1589 Score = 214 bits (236), Expect = 1e-50 Identities = 397/578 (69%), Gaps = 6/578 (1%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 || |||| ||||||||||| || ||||||||||||||||| | || || | || ||| Sbjct 1579 ACGAACTGGGGAAGGGCAATGGAGGCGAGGTTGCAGACAGCGACTTCATCGGCAGAGGTG 1520 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGT--ATGGTGCCCAAATTCTGTTGAT 66110 ||||||| || || |||||||| || || || | || ||||| || || || | | Sbjct 1519 TACTCGATGATCTCAGTGCACAGGTT--TGAAGACTTAATAGTGCCTAAGTTTTGCTAGT 1462 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | || ||||| || || ||||| ||||| | |||||| || ||||| || || | || Sbjct 1461 TGCTTTTGCGGTTACACGCATCTTTGTAGAGCATGTATGGGGTGCCTGTTTCGATCTGAC 1402 Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGC 66230 ||||||||| ||| || | || || | || | | | ||| | | | | Sbjct 1401 TCTCAATGATCCATCCCCAGAGTTACCTAGCTTTTATTGT-CTTTCTGCCTCTCTTATCC 1343 Query 66231 GT-TCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGA 66289 | || || || || || || | || || | ||||||||| || | || | ||| Sbjct 1342 TTCTCATACTGCTCATACAGCTTCTCAAACTACTCACCCCATGAATCATAGAGGCCAGGA 1283 Query 66290 CACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGA 66349 |||| | ||| ||||| || | |||||| ||||| || || | ||| || ||| Sbjct 1282 CACTCATTTGGGCACATAAGAGTCCAATCGCCATCGACCTCCACCCTCTTCATGAAAAGA 1223 Query 66350 TCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTT 66409 || || | ||| | || ||||| | ||| | || || | || || | ||||| || Sbjct 1222 TCTGGCACCCACAAAGCATAGAACAAATCTCTCGCACGCTATTCTTCCTTCCCGTGGTTC 1163 Query 66410 TTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAAC 66469 || ||| | ||||| ||| |||||||||| ||||| || || ||||||| |||||| Sbjct 1162 TTCTTCAACTGAAGGAAGTCATAGATGTCGGCGTGCCAGGGCTCAAGGTAGACGGCGAAG 1103 Query 66470 GAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGC 66529 || ||| | | |||||| ||||||||||| ||||| | | || |||| |||| ||| Sbjct 1102 GAACCCTTTCTTTTGCCACCACCTTGGTCAACGTATCTTGATGTATCGTTGTAGACTCGC 1043 Query 66530 AACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 ||||| || || | ||||||||| | ||||| || || Sbjct 1042 AACATGGGCACTAACCCGTTAGAGTATCCATTTGTTCC 1005 >seq25860 Length=1350 Score = 114 bits (126), Expect = 1e-20 Identities = 375/568 (66%), Gaps = 25/568 (4%) Strand=Plus/Plus Query 61069 CCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACG 61128 ||||| |||| | ||||| ||| ||||||||| | || || | ||||||||| Sbjct 393 CCCATTAAGTACAATGATATCTGGAAGATGTACAAAGATCAGGTTGCATGCTTCTGGACT 452 Query 61129 GTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTT-ATCGAGCGGTGA 61187 | || || |||||||| | | ||| | || || |||||| | | | ||| | || Sbjct 453 GCCGAAGAAATCGATTTGGCTCAGGACCTCAAAGATTGGGAGAGACTCACCGA-CAACGA 511 Query 61188 ACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGA 61247 ||| ||||| || | ||| | || ||||| ||||| || ||||| ||||| ||| Sbjct 512 GAGACACTTCATCAAGTACGTGCTAGCCTTCTTCGCCGCATCAGACGGCATCGTTCTTGA 571 Query 61248 GAATTTA--TTGGAACGTTTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTA 61304 ||| || | || | ||| ||| ||| | || ||| | || ||||| || ||||| Sbjct 572 GAACTTGGCTATGA--GATTCT-GCACCGAGATCCAGGTGCCTGAAGCGCGGTGCTTCTA 628 Query 61305 CGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATAC 61364 ||||||| |||| ||||| || ||||||| |||| ||| | || ||||| || Sbjct 629 CGGCTTCTAGATGATGATGGAAAACATCCACTCTGAGACCTACTCCCTGCTAATCGACAC 688 Query 61365 GTACATCAGGGAGCGGGCGGAACGTGAACGA----TTGTTCAATGCCATCGAGACGATAC 61420 |||||| | || | |||| ||| || | ||||| |||| || | || | Sbjct 689 CTACATC----AACGACCAAAACGAGAAAGACTTCCTCTTCAAAGCCACAGACAACATCC 744 Query 61421 CGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCA-CCAGTACAACGGCTACA 61479 | | |||||| ||| || || |||||| | |||||||| | |||| ||||| Sbjct 745 CCGTCGTGAAGAAGAAGGCTGACTGGGCCCTGCGTTGGATCAGCTCCGACAATAGCTAC- 803 Query 61480 TTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATT-TTTCAGTGGATCGTT 61538 | || || | | || ||||||| || || || | || ||| | | | | | Sbjct 804 ---GCAGAGAGACTCGTAGCGTTTGCGGCAGTAGAAGGAATCTTCTTTTCGGGCAGCTTC 860 Query 61539 TGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGA 61598 || | | ||||| ||| | ||||| | || |||||||| || || |||||| ||||| Sbjct 861 TG-CTCGATCTTCTGGCTCAAGAAGAGGGGGCTTATGCCTGGACTCACCTTCTCGAATGA 919 Query 61599 GTTGAT-ATCACGCGACGAGGGCATGCA 61625 | || | || | ||||| |||||||| Sbjct 920 ACTTATCAGCA-GAGACGAAGGCATGCA 946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397362469519520