Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq75327 82.4 4e-14 seq64506 82.4 4e-14 seq82678 80.6 1e-13 seq79604 80.6 1e-13 seq48486 80.6 1e-13 seq46844 80.6 1e-13 seq20530 80.6 1e-13 seq367 80.6 1e-13 seq8146 78.8 5e-13 seq59142 75.2 6e-12 seq5932 75.2 6e-12 >seq75327 Length=127 Score = 82.4 bits (90), Expect = 4e-14 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| ||| || |||||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 125 CCCAATCGCTGGTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 66 >seq64506 Length=127 Score = 82.4 bits (90), Expect = 4e-14 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| ||| || |||||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 127 CCCAATCGCTGGTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 68 >seq82678 Length=127 Score = 80.6 bits (88), Expect = 1e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || ||| ||| || |||||||| ||||| |||||||||||||||||||||| || | Sbjct 122 AACGTCTCCCAATCGCTGGTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATAG 63 Query 111 TCTTCGA 117 ||||||| Sbjct 62 TCTTCGA 56 >seq79604 Length=64 Score = 80.6 bits (88), Expect = 1e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||| || |||||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 1 CCAATCGCTGGTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 59 >seq48486 Length=127 Score = 80.6 bits (88), Expect = 1e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || || ||| || |||||||| ||||| |||||||||||||||||||||| |||| Sbjct 73 AACGTCTCCAAATCGCTGGTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCG 14 Query 111 TCTTCGA 117 ||||||| Sbjct 13 TCTTCGA 7 >seq46844 Length=127 Score = 80.6 bits (88), Expect = 1e-13 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||| || |||||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 127 CCAATCGCTGGTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 69 >seq20530 Length=127 Score = 80.6 bits (88), Expect = 1e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || | | ||| || |||||||| ||||| |||||||||||||||||||||| |||| Sbjct 72 AACGTCTCACAATCGCTGGTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCG 13 Query 111 TCTTCGA 117 ||||||| Sbjct 12 TCTTCGA 6 >seq367 Length=127 Score = 80.6 bits (88), Expect = 1e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||| || ||| ||| || |||||||| ||||| ||||||||||||||| |||||| |||| Sbjct 16 AACGTCTCCCAATCGCTGGTCGGCATGGTTTATGGTTAAGACTACGACTGTATCTAATCG 75 Query 111 TCTTCGA 117 ||||||| Sbjct 76 TCTTCGA 82 >seq8146 Length=69 Score = 78.8 bits (86), Expect = 5e-13 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| || |||||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 2 ATCGCTGGTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 57 >seq59142 Length=96 Score = 75.2 bits (82), Expect = 6e-12 Identities = 46/49 (94%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 69 GTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 94 GTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 46 >seq5932 Length=127 Score = 75.2 bits (82), Expect = 6e-12 Identities = 46/49 (94%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 69 GTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 125 GTCGGCATGGTTTATGGTTAAGACTACGACGGTATCTAATCGTCTTCGA 77 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278143572720