Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq32825 138 2e-30 seq25785 134 3e-29 seq68048 131 3e-28 seq96882 122 2e-25 seq8969 113 8e-23 seq63587 111 3e-22 seq5102 98.7 2e-18 seq74624 96.9 6e-18 seq52212 89.7 9e-16 seq51725 89.7 9e-16 seq19598 89.7 9e-16 seq800 89.7 9e-16 seq25324 84.2 4e-14 seq5932 84.2 4e-14 seq25325 82.4 1e-13 seq48632 80.6 5e-13 seq75327 77.0 6e-12 seq63586 77.0 6e-12 seq64506 75.2 2e-11 seq46844 75.2 2e-11 >seq32825 Length=127 Score = 138 bits (152), Expect = 2e-30 Identities = 103/121 (85%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 174 AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 |||||| ||||||||||||||||||||| ||||| | | |||| |||||||||| || Sbjct 7 AGGACCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGTCAGATGT 66 Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293 ||||||||||||||||| |||| ||||| |||||||||| | ||||||||||||||| Sbjct 67 GAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCATCTGCCAAGGATGTTTTCA 126 Query 294 T 294 | Sbjct 127 T 127 >seq25785 Length=127 Score = 134 bits (148), Expect = 3e-29 Identities = 101/119 (85%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 174 AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 |||||| ||||||||||||||||||||| ||||| | | |||| |||||||| |||| Sbjct 9 AGGACCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGTCATAGGT 68 Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTC 292 ||||||||||||||||| |||| ||||| |||||||||| | |||||||||||||| Sbjct 69 GAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCATCTGCCAAGGATGTTTTC 127 >seq68048 Length=127 Score = 131 bits (144), Expect = 3e-28 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 174 AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 |||||| ||||||||||||||||||||| ||||| | | |||| |||||| |||||| Sbjct 117 AGGACCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGTAAGAGGT 58 Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTT 290 ||||||||||||||||| |||| ||||| |||||||||| | |||||||||||| Sbjct 57 GAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCATCTGCCAAGGATGTTT 1 >seq96882 Length=10023 Score = 122 bits (134), Expect = 2e-25 Identities = 96/114 (84%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 205 GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTAC 264 ||||| | | |||| |||||||||||||||||||||||||||||| |||| ||||| | Sbjct 7572 GGGGGCATTAATATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGATTAACTTC 7631 Query 265 TGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||| | |||||||||||||||||||||| |||| ||||||||||| Sbjct 7632 TGTAAAAGCATCTGCCAAGGATGTTTTCATTAATCA-AGAACAAAAGTTAGGGG 7684 >seq8969 Length=127 Score = 113 bits (124), Expect = 8e-23 Identities = 83/97 (86%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 174 AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 |||||| ||||||||||||||||||||| || || | | |||| ||||||||||||| Sbjct 97 AGGACCAGGGTAATGATTAATAGGGATAGTTGGTGGCATTAATATTTAATTGTCAGAGGT 38 Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAA 270 ||||||||||||||||| |||| ||||| ||||||| Sbjct 37 GAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAA 1 >seq63587 Length=127 Score = 111 bits (122), Expect = 3e-22 Identities = 82/96 (85%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 174 AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 |||||| ||||||||||||||||||||| | ||| | | |||| ||||||||||||| Sbjct 96 AGGACCAGGGTAATGATTAATAGGGATAGTTGTGGGCATTAATATTTAATTGTCAGAGGT 37 Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGA 269 ||||||||||||||||| |||| ||||| |||||| Sbjct 36 GAAATTCTTGGATTTATGAAAGATTAACTTCTGCGA 1 >seq5102 Length=127 Score = 98.7 bits (108), Expect = 2e-18 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 174 AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 |||||| |||||||||||||| |||||| ||||| | | |||| ||||||||||||| Sbjct 41 AGGACCAGGGTAATGATTAATAGTGATAGTTGGGGGCATTAATATTTAATTGTCAGAGGT 100 Query 234 GAAATTCTTGGATTTATTGAAGACTAA 260 ||||||||||||||||| |||| ||| Sbjct 101 GAAATTCTTGGATTTATGAAAGATTAA 127 >seq74624 Length=127 Score = 96.9 bits (106), Expect = 6e-18 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 174 AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 |||||| ||||||||||||| ||||||| ||||| | | |||| ||||||||||||| Sbjct 42 AGGACCAGGGTAATGATTAATATGGATAGTTGGGGGCATTAATATTTAATTGTCAGAGGT 101 Query 234 GAAATTCTTGGATTTATTGAAGACTA 259 ||||||||||||||||| |||| || Sbjct 102 GAAATTCTTGGATTTATGAAAGATTA 127 >seq52212 Length=127 Score = 89.7 bits (98), Expect = 9e-16 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 174 AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 |||||| | ||||||||||||||||||| ||||| | | |||| ||||||||||||| Sbjct 54 AGGACCAGGGGAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGTCAGAGGT 113 Query 234 GAAATTCTTGGATT 247 |||||||||||||| Sbjct 114 GAAATTCTTGGATT 127 >seq51725 Length=127 Score = 89.7 bits (98), Expect = 9e-16 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 174 AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 |||||| | ||||||||||||||||||| ||||| | | |||| ||||||||||||| Sbjct 54 AGGACCAGGGAAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGTCAGAGGT 113 Query 234 GAAATTCTTGGATT 247 |||||||||||||| Sbjct 114 GAAATTCTTGGATT 127 >seq19598 Length=127 Score = 89.7 bits (98), Expect = 9e-16 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 174 AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 |||||| ||||||||||||||||||||| ||||| | | |||| ||||||||||||| Sbjct 56 AGGACCAGTGTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGTCAGAGGT 115 Query 234 GAAATTCTTGGA 245 |||||||||||| Sbjct 116 GAAATTCTTGGA 127 >seq800 Length=74 Score = 89.7 bits (98), Expect = 9e-16 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 232 GTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTT 291 ||||||||||||||||||| |||| ||||| |||||||||| | ||||||||||||| Sbjct 74 GTGAAATTCTTGGATTTATGAAAGATTAACTTCTGCGAAAGCATCTGCCAAGGATGTTTT 15 Query 292 CATTAATCA 300 ||||||||| Sbjct 14 CATTAATCA 6 >seq25324 Length=75 Score = 84.2 bits (92), Expect = 4e-14 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 174 AGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 |||||| ||||||||||||||||||||| ||||| | | |||| ||||||||||||| Sbjct 69 AGGACCAGGGTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGTCAGAGGT 10 Query 234 GAAATTCTT 242 ||||||||| Sbjct 9 GAAATTCTT 1 >seq5932 Length=127 Score = 84.2 bits (92), Expect = 4e-14 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| |||| ||||| |||||||||| | |||||||||||||||||||||| Sbjct 1 GGATTTATGAAAGATTAACTTCTGCGAAAGCATCTGCCAAGGATGTTTTCATTAATCA-A 59 Query 303 GAACGAAAGTTAGGGG 318 |||| ||||||||||| Sbjct 60 GAACTAAAGTTAGGGG 75 >seq25325 Length=127 Score = 82.4 bits (90), Expect = 1e-13 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||||||||||||| ||||| | | |||| |||||||||||||||||||||| Sbjct 60 GTAATGATTAATAGGGATAGTTGGGGGCATTAATATTTAATTGTCAGAGGTGAAATTCTT 1 >seq48632 Length=69 Score = 80.6 bits (88), Expect = 5e-13 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 198 GATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGAC 257 |||||| ||||| | | |||| |||||||||||||||||||||||||||||| |||| Sbjct 69 GATAGTTGGGGGCATTAATATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGAT 10 Query 258 TAACTACTG 266 ||||| ||| Sbjct 9 TAACTTCTG 1 >seq75327 Length=127 Score = 77.0 bits (84), Expect = 6e-12 Identities = 56/64 (88%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||| ||||| |||||||||| | |||||||||||||||||||||| ||||||||||| Sbjct 1 AGATTAACTTCTGCGAAAGCATCTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 59 Query 314 AGGG 317 |||| Sbjct 60 AGGG 63 >seq63586 Length=66 Score = 77.0 bits (84), Expect = 6e-12 Identities = 56/65 (86%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 205 GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTAC 264 ||||| | | |||| |||||||||||||||||||||||||||||| |||| ||||| | Sbjct 65 GGGGGCATTAATATTTAATTGTCAGAGGTGAAATTCTTGGATTTATGAAAGATTAACTTC 6 Query 265 TGCGA 269 ||||| Sbjct 5 TGCGA 1 >seq64506 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 57/66 (86%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||| ||||| |||||||||| | |||||||||||||||||||||| |||||||||| Sbjct 2 AAGATTAACTTCTGCGAAAGCATCTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGT 60 Query 313 TAGGGG 318 ||| || Sbjct 61 TAGTGG 66 >seq46844 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 57/66 (86%), Gaps = 1/66 (2%) Strand=Plus/Plus Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||| ||||| |||||||||| | |||||||||||||||||||||| |||||||||| Sbjct 3 AAGATTAACTTCTGCGAAAGCATCTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGT 61 Query 313 TAGGGG 318 || ||| Sbjct 62 TATGGG 67 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914300834304