Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20astronyxis_20[genbank_20GCA_5F000826245.1_202015-01- 07] 98,248 sequences; 83,432,518 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq8706 206 4e-51 seq4193 206 4e-51 seq6164 185 1e-44 seq96882 174 3e-41 seq34360 163 5e-38 seq97287 159 6e-37 seq6163 145 1e-32 seq48340 132 8e-29 seq8705 132 8e-29 seq30749 131 3e-28 seq10354 129 9e-28 seq10043 129 9e-28 seq3021 129 9e-28 seq48339 122 1e-25 seq6001 111 3e-22 seq97471 102 1e-19 seq92536 96.9 6e-18 seq61856 87.8 3e-15 seq18914 87.8 3e-15 seq25551 86.0 1e-14 seq77915 75.2 2e-11 seq48665 75.2 2e-11 seq35071 75.2 2e-11 >seq8706 Length=127 Score = 206 bits (228), Expect = 4e-51 Identities = 117/119 (98%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 140 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCAC 199 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 7 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCACTCAAC 66 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 125 >seq4193 Length=127 Score = 206 bits (228), Expect = 4e-51 Identities = 117/119 (98%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 140 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCAC 199 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 120 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCACTACAC 61 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 2 >seq6164 Length=127 Score = 185 bits (204), Expect = 1e-44 Identities = 105/107 (98%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 140 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCAC 199 |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| Sbjct 107 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAACAAGACAAATCACTCCAC 48 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 1 >seq96882 Length=10023 Score = 174 bits (192), Expect = 3e-41 Identities = 110/119 (92%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 140 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCAC 199 ||||||||||||| ||||||||| |||| ||| ||||||||||||||||||||||||| Sbjct 8138 GGCTATTTAGCAGATTAAGGTCTTGTTCATTAATAGAATTAACCAGACAAATCACTCCAC 8079 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 8078 CAACTAAGAACAACCATGCACCACCACCTATAGAATCAAGAAAGAGCTATCAATCTGTC 8020 Score = 102 bits (112), Expect = 1e-19 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| | ||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 8402 TCAGTGTAGCATACATGCAGCCTAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 8343 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC 116 ||||||| | ||| || | |||| ||||||||||| Sbjct 8342 AAACTTCTGTCTGCTAAGTGCAGACAGTCTCTCTAAGAAGC 8302 >seq34360 Length=127 Score = 163 bits (180), Expect = 5e-38 Identities = 93/95 (98%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 164 GTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 GTTCGTTAACGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 68 Query 224 CACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||||||||||||||||||||||||||||| Sbjct 67 CACACATAGAATCAAGAAAGAGCTATCAATCTGTC 33 >seq97287 Length=14501 Score = 159 bits (176), Expect = 6e-37 Identities = 97/103 (94%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 140 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCAC 199 |||||||||||||||||| |||| |||||||| | ||||||||||||||||||||||||| Sbjct 1543 GGCTATTTAGCAGGTTAAAGTCTTGTTCGTTAACAGAATTAACCAGACAAATCACTCCAC 1484 Query 200 CAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAA 242 |||||||||| ||||||||||||||||||||||||||||| || Sbjct 1483 CAACTAAGAATGGCCATGCACCACCACCCATAGAATCAAGTAA 1441 Score = 118 bits (130), Expect = 2e-24 Identities = 90/103 (87%), Gaps = 4/103 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||| | |||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 1809 TCAGTGTAGCACACGTGTGGCCTAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 1750 Query 76 AAACTTCCATTGGCTGGAAGC-CA-ATAGTCCCTCTAAGAAGC 116 ||||||| | ||| |||| || | |||||||||||||||| Sbjct 1749 AAACTTCTGTCTGCT--AAGCACAGACAGTCCCTCTAAGAAGC 1709 >seq6163 Length=83 Score = 145 bits (160), Expect = 1e-32 Identities = 82/83 (99%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 164 GTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 223 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 83 GTTCGTTAACGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCAC 24 Query 224 CACCCATAGAATCAAGAAAGAGC 246 ||||||||||||||||||||||| Sbjct 23 CACCCATAGAATCAAGAAAGAGC 1 >seq48340 Length=127 Score = 132 bits (146), Expect = 8e-29 Identities = 92/101 (91%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 29 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGTGCATCACAGACCTGTTATTGCCTC 88 Query 76 AAACTTCCATTGGCTGGAAGC-CA-ATAGTCCCTCTAAGAA 114 |||||||| | ||| |||| || | |||||||||||||| Sbjct 89 AAACTTCCGTCTGCT--AAGCGCAGACAGTCCCTCTAAGAA 127 >seq8705 Length=82 Score = 132 bits (146), Expect = 8e-29 Identities = 75/76 (99%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 140 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCAC 199 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 7 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCACTCCAC 66 Query 200 CAACTAAGAACGGCCA 215 |||||||||||||||| Sbjct 67 CAACTAAGAACGGCCA 82 >seq30749 Length=127 Score = 131 bits (144), Expect = 3e-28 Identities = 91/100 (91%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 30 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAATGGCATCACAGACCTGTTATTGCCTC 89 Query 76 AAACTTCCATTGGCTGGAAGC-CA-ATAGTCCCTCTAAGA 113 |||||||| | ||| |||| || | ||||||||||||| Sbjct 90 AAACTTCCGTCTGCT--AAGCGCAGACAGTCCCTCTAAGA 127 >seq10354 Length=127 Score = 129 bits (142), Expect = 9e-28 Identities = 90/99 (91%), Gaps = 4/99 (4%) Strand=Plus/Minus Query 20 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 79 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 TGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAAC 68 Query 80 TTCCATTGGCTGGAAGC-CA-ATAGTCCCTCTAAGAAGC 116 ||| | ||| |||| || | |||||||||||||||| Sbjct 67 TTCAGTCTGCT--AAGCGCAGACAGTCCCTCTAAGAAGC 31 >seq10043 Length=74 Score = 129 bits (142), Expect = 9e-28 Identities = 73/74 (99%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 153 GTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGG 212 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 74 GTTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGG 15 Query 213 CCATGCACCACCAC 226 |||||||||||||| Sbjct 14 CCATGCACCACCAC 1 >seq3021 Length=127 Score = 129 bits (142), Expect = 9e-28 Identities = 74/76 (97%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 140 GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCAC 199 |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 52 GGCTATTTAGCATGTTAAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCACTCCAC 111 Query 200 CAACTAAGAACGGCCA 215 |||||||||||||||| Sbjct 112 CAACTAAGAACGGCCA 127 >seq48339 Length=95 Score = 122 bits (134), Expect = 1e-25 Identities = 67/67 (100%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 29 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 88 Query 76 AAACTTC 82 ||||||| Sbjct 89 AAACTTC 95 >seq6001 Length=76 Score = 111 bits (122), Expect = 3e-22 Identities = 61/61 (100%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 198 ACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 60 Query 258 C 258 | Sbjct 61 C 61 >seq97471 Length=3266 Score = 102 bits (112), Expect = 1e-19 Identities = 56/56 (100%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 756 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 701 >seq92536 Length=5458 Score = 96.9 bits (106), Expect = 6e-18 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 |||||| || ||||| |||| || |||| |||||| || |||||||| || ||| Sbjct 4390 TATTTAACAAGTTAAAGTCTTATTTGTTAATAAAATTAATCAAACAAATCAACTCATCAA 4331 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||| ||||| ||| |||||| ||||||| || |||||| ||||||| Sbjct 4330 CTAAGAACAGCCATACACTACCACCTATAGAATTAAAAAAGAGTTATCAAT 4280 >seq61856 Length=127 Score = 87.8 bits (96), Expect = 3e-15 Identities = 48/48 (100%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 211 GGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 GGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 80 >seq18914 Length=127 Score = 87.8 bits (96), Expect = 3e-15 Identities = 67/76 (88%), Gaps = 4/76 (5%) Strand=Plus/Minus Query 43 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CA-AT 100 ||||||||||||||||||||||||||||||||||||||||| | ||| |||| || | Sbjct 127 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTCTGCT--AAGCGCAGAC 70 Query 101 AGTCCCTCTAAGAAGC 116 ||||| |||||||||| Sbjct 69 AGTCCATCTAAGAAGC 54 >seq25551 Length=71 Score = 86.0 bits (94), Expect = 1e-14 Identities = 65/73 (89%), Gaps = 4/73 (5%) Strand=Plus/Minus Query 43 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CA-AT 100 ||||||||||||||||||||||||||||||||||||||||| | ||| |||| || | Sbjct 71 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTCTGCT--AAGCGCAGAC 14 Query 101 AGTCCCTCTAAGA 113 ||||||||||||| Sbjct 13 AGTCCCTCTAAGA 1 >seq77915 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 41/41 (100%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 218 CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 41 >seq48665 Length=73 Score = 75.2 bits (82), Expect = 2e-11 Identities = 41/41 (100%), Gaps = 0/41 (0%) Strand=Plus/Plus Query 218 CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 41 >seq35071 Length=75 Score = 75.2 bits (82), Expect = 2e-11 Identities = 59/67 (88%), Gaps = 4/67 (6%) Strand=Plus/Minus Query 52 GCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CA-ATAGTCCCTCT 109 |||||||||||||||||||||||||||||||| | ||| |||| || | ||||||||| Sbjct 75 GCATCACAGACCTGTTATTGCCTCAAACTTCCGTCTGCT--AAGCGCAGACAGTCCCTCT 18 Query 110 AAGAAGC 116 ||||||| Sbjct 17 AAGAAGC 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796041623688